y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G038500.1 |
Family | GH35 |
Protein Properties | Length: 873 Molecular Weight: 96874.3 Isoelectric Point: 8.6713 |
Chromosome | Chromosome/Scaffold: 03 Start: 5085032 End: 5091494 |
Description | beta galactosidase 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 41 | 343 | 0 |
TINGQRRILISGSIHYPRSSPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFVKLAKEAGLYVHLRIGPYICAEWNFGGFPVWLKY IPGINFRTDNGPFKAQMQKFTTKVVNMMKAERLFETQGGPIILSQIENEYGPMEYEIGSPGKAYTKWAAEMAVGLRTGVPWVMCKQDDAPDPIINTCNGF YCDYFSPNKAYKPKMWTEAWTGWFTQFGGPVPHRPAEDMAFSVARFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKD LHR |
Full Sequence |
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Protein Sequence Length: 873 Download |
MALKKTSMCN SSNALLVLLF LVSSLACSVT ASVSYDSKAI TINGQRRILI SGSIHYPRSS 60 PEMWPDLIQK AKEGGLDVIQ TYVFWNGHEP SPGKYYFEGN YDLVKFVKLA KEAGLYVHLR 120 IGPYICAEWN FGGFPVWLKY IPGINFRTDN GPFKAQMQKF TTKVVNMMKA ERLFETQGGP 180 IILSQIENEY GPMEYEIGSP GKAYTKWAAE MAVGLRTGVP WVMCKQDDAP DPIINTCNGF 240 YCDYFSPNKA YKPKMWTEAW TGWFTQFGGP VPHRPAEDMA FSVARFIQKG GSFINYYMYH 300 GGTNFGRTAG GPFIATSYDY DAPLDEYGLL RQPKWGHLKD LHRAIKLCEP ALVSGDATVI 360 PLGNYQEAHV FNYKAGGCAA FLANYHQRSF AKVSFRNMHY NLPPWSISIL PDCKNTVYNT 420 ARVGAQSARM KMTPVPMHGG FSWQAYNEEP SASGDSTFTM VGLLEQINTT RDVSDYLWYM 480 TDVHIDPSEG FLRSGKYPVL GVLSAGHALH VFINGQLSGT AYGSLDFPKL TFTQGVKLRA 540 GVNKISLLSI AVGLPNVGPH FETWNAGILG PVTLNGLNEG RRDLSWQKWS YKIGLHGEAL 600 GLHSISGSSS VEWAEGSLVA QRQPLSWYKT TFNAPAGNSP LALDMGSMGK GQIWINGQHV 660 GRHWPAYKAS GTCGDCSYIG TYNEKKCSTN CGEASQRWYH VPQSWLKPTG NLLVVFEEWG 720 GDPNGISLVR RDVDSVCADI YEWQPTLMNY QMQASGKVNK PLRPKAHLSC GPGQKIRSIK 780 FASFGTPEGV CGSYRQGSCH AFHSYDAFNN VCSLAFVLPS LFSSRKTNHF TSDSYENAVL 840 QFVGNLNSRD LFLSTVQFLK FFFLSRKAVQ TE* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02140 | Gal_Lectin | 1.0e-5 | 768 | 812 | 49 | + Galactose binding lectin domain. | ||
pfam02449 | Glyco_hydro_42 | 1.0e-7 | 55 | 210 | 173 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
COG1874 | LacA | 2.0e-24 | 33 | 335 | 343 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 2.0e-167 | 39 | 345 | 322 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 27 | 812 | 787 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004565 | beta-galactosidase activity |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK96254.1 | 0 | 1 | 812 | 1 | 812 | unknown [Populus trichocarpa x Populus deltoides] |
EMBL | CAC44500.1 | 0 | 24 | 812 | 21 | 809 | beta-galactosidase [Fragaria x ananassa] |
RefSeq | XP_002327432.1 | 0 | 8 | 812 | 1 | 805 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329051.1 | 0 | 10 | 812 | 2 | 796 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527409.1 | 0 | 3 | 812 | 1 | 811 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 1.4013e-45 | 42 | 341 | 17 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 1.99993e-41 | 32 | 332 | 10 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 1.99993e-41 | 32 | 332 | 10 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |