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Genome Details

Selected Rep_genome_ID: Rep_625
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
Rep_625 3,098,072 95.0454% 1.79487% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_625_CGC3 CGCFAM_00005 Yes 12 7
Rep_625_CGC45 CGCFAM_00016 Yes 4 1 host glycan
Rep_625_CGC50 CGCFAM_00016 Yes 8 1 host glycan
Rep_625_CGC9 CGCFAM_00016 Yes 7 2 host glycan
Rep_625_CGC41 CGCFAM_00062 Yes 10 2 beta-glucan
Rep_625_CGC37 CGCFAM_00079 Yes 6 3 pectin
Rep_625_CGC4 CGCFAM_00110 Yes 6 3 pectin/host glycan
Rep_625_CGC30 CGCFAM_00152 Yes 6 2
Rep_625_CGC26 CGCFAM_00175 Yes 6 2 alpha-glucan
Rep_625_CGC53 CGCFAM_00213 Yes 7 4 beta-glucan
Rep_625_CGC38 CGCFAM_00475 Yes 9 3
Rep_625_CGC11 CGCFAM_00564 Yes 5 1
Rep_625_CGC15 CGCFAM_00921 Yes 4 1
Rep_625_CGC22 CGCFAM_01056 Yes 4 1
Rep_625_CGC39 CGCFAM_01497 Yes 9 4
Rep_625_CGC36 CGCFAM_01827 Yes 3 2
Rep_625_CGC16 CGCFAM_01981 Yes 4 1
Rep_625_CGC47 CGCFAM_02171 Yes 9 1
Rep_625_CGC33 CGCFAM_02304 Yes 4 1
Rep_625_CGC43 CGCFAM_02852 Yes 4 1
Rep_625_CGC24 CGCFAM_04872 Yes 5 1
Rep_625_CGC17 CGCFAM_07383 Yes 5 3
Rep_625_CGC52 CGCFAM_07384 Yes 6 4
Rep_625_CGC35 CGCFAM_11002 Yes 7 3
Top CAZyme Families