Cluster: Rep_625_CGC35
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_625
- CGC Family ID: CGCFAM_11002
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_625_c_128 | Rep_625_c_128_42 | 59803 | 61164 | - | 2.A.1.1.55 |
| TF | Rep_625_c_128 | Rep_625_c_128_43 | 61427 | 62245 | + | HTH_AraC | HTH_AraC |
| sulfatase | Rep_625_c_128 | Rep_625_c_128_44 | 62273 | 63421 | - | S1_4 |
| CAZyme | Rep_625_c_128 | Rep_625_c_128_45 | 63466 | 65616 | - | GH36 |
| CAZyme | Rep_625_c_128 | Rep_625_c_128_46 | 65632 | 67635 | - | GH36 |
| TF | Rep_625_c_128 | Rep_625_c_128_47 | 67732 | 71763 | - | HTH_AraC |
| CAZyme | Rep_625_c_128 | Rep_625_c_128_48 | 71881 | 74832 | - | CBM32 | GH2 |
Gene ID: Rep_625_c_128_42
Type: TC
Location: 59803 - 61164 (-)
Type: TC
Location: 59803 - 61164 (-)
Gene ID: Rep_625_c_128_43
Type: TF
Location: 61427 - 62245 (+)
Type: TF
Location: 61427 - 62245 (+)
Gene ID: Rep_625_c_128_44
Type: sulfatase
Location: 62273 - 63421 (-)
Type: sulfatase
Location: 62273 - 63421 (-)
Gene ID: Rep_625_c_128_45
Type: CAZyme
Location: 63466 - 65616 (-)
Type: CAZyme
Location: 63466 - 65616 (-)
Gene ID: Rep_625_c_128_46
Type: CAZyme
Location: 65632 - 67635 (-)
Type: CAZyme
Location: 65632 - 67635 (-)
Gene ID: Rep_625_c_128_47
Type: TF
Location: 67732 - 71763 (-)
Type: TF
Location: 67732 - 71763 (-)
Gene ID: Rep_625_c_128_48
Type: CAZyme
Location: 71881 - 74832 (-)
Type: CAZyme
Location: 71881 - 74832 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.