Cluster: Rep_625_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_625
- CGC Family ID: CGCFAM_00005
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_625_c_7 | Rep_625_c_7_18 | 20956 | 21630 | - | 9.B.18.1.3 |
| CAZyme | Rep_625_c_7 | Rep_625_c_7_19 | 21620 | 22744 | - | GT4 |
| NULL(UNKNOWN) | Rep_625_c_7 | Rep_625_c_7_20 | 22782 | 23849 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_625_c_7 | Rep_625_c_7_21 | 24096 | 25340 | - | GT4 |
| CAZyme | Rep_625_c_7 | Rep_625_c_7_22 | 25337 | 26476 | - | GT4 |
| pfam | Rep_625_c_7 | Rep_625_c_7_23 | 26473 | 27546 | - | Acyl_transf_3 |
| NULL(UNKNOWN) | Rep_625_c_7 | Rep_625_c_7_24 | 27591 | 28904 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_625_c_7 | Rep_625_c_7_25 | 28912 | 29904 | - | GT2 |
| CAZyme | Rep_625_c_7 | Rep_625_c_7_26 | 29885 | 30823 | - | GT8 |
| NULL(UNKNOWN) | Rep_625_c_7 | Rep_625_c_7_27 | 30825 | 31790 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_625_c_7 | Rep_625_c_7_28 | 31807 | 32859 | - | GT2 |
| CAZyme | Rep_625_c_7 | Rep_625_c_7_29 | 32834 | 33787 | - | GT2 |
Gene ID: Rep_625_c_7_18
Type: TC
Location: 20956 - 21630 (-)
Type: TC
Location: 20956 - 21630 (-)
Gene ID: Rep_625_c_7_19
Type: CAZyme
Location: 21620 - 22744 (-)
Type: CAZyme
Location: 21620 - 22744 (-)
Gene ID: Rep_625_c_7_20
Type:
Location: 22782 - 23849 (-)
Type:
Location: 22782 - 23849 (-)
Gene ID: Rep_625_c_7_21
Type: CAZyme
Location: 24096 - 25340 (-)
Type: CAZyme
Location: 24096 - 25340 (-)
Gene ID: Rep_625_c_7_22
Type: CAZyme
Location: 25337 - 26476 (-)
Type: CAZyme
Location: 25337 - 26476 (-)
Gene ID: Rep_625_c_7_23
Type: pfam
Location: 26473 - 27546 (-)
Type: pfam
Location: 26473 - 27546 (-)
Gene ID: Rep_625_c_7_24
Type:
Location: 27591 - 28904 (-)
Type:
Location: 27591 - 28904 (-)
Gene ID: Rep_625_c_7_25
Type: CAZyme
Location: 28912 - 29904 (-)
Type: CAZyme
Location: 28912 - 29904 (-)
Gene ID: Rep_625_c_7_26
Type: CAZyme
Location: 29885 - 30823 (-)
Type: CAZyme
Location: 29885 - 30823 (-)
Gene ID: Rep_625_c_7_27
Type:
Location: 30825 - 31790 (-)
Type:
Location: 30825 - 31790 (-)
Gene ID: Rep_625_c_7_28
Type: CAZyme
Location: 31807 - 32859 (-)
Type: CAZyme
Location: 31807 - 32859 (-)
Gene ID: Rep_625_c_7_29
Type: CAZyme
Location: 32834 - 33787 (-)
Type: CAZyme
Location: 32834 - 33787 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.