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Cluster: Rep_625_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_625_c_125 Rep_625_c_125_4 3882 5477 + GH63
pfam Rep_625_c_125 Rep_625_c_125_5 5492 6496 + Metallophos
sulfatase Rep_625_c_125 Rep_625_c_125_6 6513 7334 + S1_7
CAZyme Rep_625_c_125 Rep_625_c_125_7 7331 9109 + GH20
TC Rep_625_c_125 Rep_625_c_125_8 9378 12578 + 1.B.14.6.1
TC Rep_625_c_125 Rep_625_c_125_9 12593 14218 + 8.A.46.1.3
Gene ID: Rep_625_c_125_4
Type: CAZyme
Location: 3882 - 5477 (+)
Gene ID: Rep_625_c_125_5
Type: pfam
Location: 5492 - 6496 (+)
Gene ID: Rep_625_c_125_6
Type: sulfatase
Location: 6513 - 7334 (+)
Gene ID: Rep_625_c_125_7
Type: CAZyme
Location: 7331 - 9109 (+)
Gene ID: Rep_625_c_125_8
Type: TC
Location: 9378 - 12578 (+)
Gene ID: Rep_625_c_125_9
Type: TC
Location: 12593 - 14218 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_625_c_125_6 vegan > omnivore 1.14828 0.00699
Rep_625_c_125_9 vegan > omnivore 1.47342 0.00699

🧭 Explore Read Mapping of CGC

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