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Cluster: Rep_625_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_625_c_142 Rep_625_c_142_1 254 2479 - GH3
pfam Rep_625_c_142 Rep_625_c_142_2 2582 4651 - DUF5016 | DUF5125 | DUF5125 | DUF5121 | DUF5121
CAZyme Rep_625_c_142 Rep_625_c_142_3 4672 6183 - GH30_3
pfam Rep_625_c_142 Rep_625_c_142_4 6202 7749 - SusD_RagB | SusD-like_3
TC Rep_625_c_142 Rep_625_c_142_5 7766 10804 - 1.B.14.6.1
pfam Rep_625_c_142 Rep_625_c_142_6 11136 12821 + DUF6377
pfam Rep_625_c_142 Rep_625_c_142_7 13190 13681 - tRNA_edit
TC Rep_625_c_142 Rep_625_c_142_8 13768 16257 + 1.B.14.6.10
pfam Rep_625_c_142 Rep_625_c_142_9 16372 17007 + Hydrolase | HAD | Hydrolase_like | HAD_2
TC Rep_625_c_142 Rep_625_c_142_10 17069 17434 + 2.A.7.34.6
Gene ID: Rep_625_c_142_1
Type: CAZyme
Location: 254 - 2479 (-)
Gene ID: Rep_625_c_142_2
Type: pfam
Location: 2582 - 4651 (-)
Gene ID: Rep_625_c_142_3
Type: CAZyme
Location: 4672 - 6183 (-)
Gene ID: Rep_625_c_142_4
Type: pfam
Location: 6202 - 7749 (-)
Gene ID: Rep_625_c_142_5
Type: TC
Location: 7766 - 10804 (-)
Gene ID: Rep_625_c_142_6
Type: pfam
Location: 11136 - 12821 (+)
Gene ID: Rep_625_c_142_7
Type: pfam
Location: 13190 - 13681 (-)
Gene ID: Rep_625_c_142_8
Type: TC
Location: 13768 - 16257 (+)
Gene ID: Rep_625_c_142_9
Type: pfam
Location: 16372 - 17007 (+)
Gene ID: Rep_625_c_142_10
Type: TC
Location: 17069 - 17434 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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