Cluster: Rep_625_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: Rep_625
- CGC Family ID: CGCFAM_00016
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_625_c_25 | Rep_625_c_25_2 | 864 | 2918 | - | GH20 |
| NULL(UNKNOWN) | Rep_625_c_25 | Rep_625_c_25_3 | 3148 | 4254 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_625_c_25 | Rep_625_c_25_4 | 4257 | 5738 | - | GH18 |
| pfam | Rep_625_c_25 | Rep_625_c_25_5 | 5767 | 6966 | - | Pentaxin | BT_3987-like_N | Laminin_G_3 |
| pfam | Rep_625_c_25 | Rep_625_c_25_6 | 6979 | 7986 | - | GH18_BT1044-like |
| TC | Rep_625_c_25 | Rep_625_c_25_7 | 8001 | 9566 | - | 8.A.46.2.2 |
| TC | Rep_625_c_25 | Rep_625_c_25_8 | 9586 | 12969 | - | 1.B.14.6.13 |
Gene ID: Rep_625_c_25_2
Type: CAZyme
Location: 864 - 2918 (-)
Type: CAZyme
Location: 864 - 2918 (-)
Gene ID: Rep_625_c_25_3
Type:
Location: 3148 - 4254 (-)
Type:
Location: 3148 - 4254 (-)
Gene ID: Rep_625_c_25_4
Type: CAZyme
Location: 4257 - 5738 (-)
Type: CAZyme
Location: 4257 - 5738 (-)
Gene ID: Rep_625_c_25_5
Type: pfam
Location: 5767 - 6966 (-)
Type: pfam
Location: 5767 - 6966 (-)
Gene ID: Rep_625_c_25_6
Type: pfam
Location: 6979 - 7986 (-)
Type: pfam
Location: 6979 - 7986 (-)
Gene ID: Rep_625_c_25_7
Type: TC
Location: 8001 - 9566 (-)
Type: TC
Location: 8001 - 9566 (-)
Gene ID: Rep_625_c_25_8
Type: TC
Location: 9586 - 12969 (-)
Type: TC
Location: 9586 - 12969 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.