Cluster: Rep_625_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin/host glycan
- Genome ID: Rep_625
- CGC Family ID: CGCFAM_00110
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_625_c_8 | Rep_625_c_8_11 | 11579 | 14794 | + | 1.B.14.6.1 |
| pfam | Rep_625_c_8 | Rep_625_c_8_12 | 14813 | 16639 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| CAZyme | Rep_625_c_8 | Rep_625_c_8_13 | 16659 | 18557 | + | GH16_3 |
| sulfatase | Rep_625_c_8 | Rep_625_c_8_14 | 18720 | 20342 | + | S1_11 |
| CAZyme | Rep_625_c_8 | Rep_625_c_8_15 | 20339 | 22681 | + | GH20 |
| CAZyme | Rep_625_c_8 | Rep_625_c_8_16 | 22703 | 25243 | + | GH2 |
Gene ID: Rep_625_c_8_11
Type: TC
Location: 11579 - 14794 (+)
Type: TC
Location: 11579 - 14794 (+)
Gene ID: Rep_625_c_8_12
Type: pfam
Location: 14813 - 16639 (+)
Type: pfam
Location: 14813 - 16639 (+)
Gene ID: Rep_625_c_8_13
Type: CAZyme
Location: 16659 - 18557 (+)
Type: CAZyme
Location: 16659 - 18557 (+)
Gene ID: Rep_625_c_8_14
Type: sulfatase
Location: 18720 - 20342 (+)
Type: sulfatase
Location: 18720 - 20342 (+)
Gene ID: Rep_625_c_8_15
Type: CAZyme
Location: 20339 - 22681 (+)
Type: CAZyme
Location: 20339 - 22681 (+)
Gene ID: Rep_625_c_8_16
Type: CAZyme
Location: 22703 - 25243 (+)
Type: CAZyme
Location: 22703 - 25243 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.