Cluster: Rep_625_CGC37
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin
- Genome ID: Rep_625
- CGC Family ID: CGCFAM_00079
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_625_c_135 | Rep_625_c_135_25 | 32903 | 35956 | + | 1.B.14.6.2 |
| TC | Rep_625_c_135 | Rep_625_c_135_26 | 35970 | 37547 | + | 8.A.46.1.3 |
| pfam | Rep_625_c_135 | Rep_625_c_135_27 | 37563 | 38426 | + | Laminin_G_3 |
| CAZyme | Rep_625_c_135 | Rep_625_c_135_28 | 38454 | 40127 | + | GH144 |
| CAZyme | Rep_625_c_135 | Rep_625_c_135_29 | 40159 | 42444 | + | GH3 |
| CAZyme | Rep_625_c_135 | Rep_625_c_135_30 | 42457 | 43824 | + | GH144 |
Gene ID: Rep_625_c_135_25
Type: TC
Location: 32903 - 35956 (+)
Type: TC
Location: 32903 - 35956 (+)
Gene ID: Rep_625_c_135_26
Type: TC
Location: 35970 - 37547 (+)
Type: TC
Location: 35970 - 37547 (+)
Gene ID: Rep_625_c_135_27
Type: pfam
Location: 37563 - 38426 (+)
Type: pfam
Location: 37563 - 38426 (+)
Gene ID: Rep_625_c_135_28
Type: CAZyme
Location: 38454 - 40127 (+)
Type: CAZyme
Location: 38454 - 40127 (+)
Gene ID: Rep_625_c_135_29
Type: CAZyme
Location: 40159 - 42444 (+)
Type: CAZyme
Location: 40159 - 42444 (+)
Gene ID: Rep_625_c_135_30
Type: CAZyme
Location: 42457 - 43824 (+)
Type: CAZyme
Location: 42457 - 43824 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_625_c_135_25 | vegetarian > omnivore | 1.26008 | 0.01619 |
| Rep_625_c_135_26 | vegetarian > omnivore | 1.35664 | 0.04251 |
| Rep_625_c_135_28 | vegetarian > omnivore | 1.32815 | 0.01619 |
| Rep_625_c_135_29 | vegetarian > omnivore | 1.33143 | 0.01619 |
| Rep_625_c_135_30 | vegan > omnivore | 1.12400 | 0.03596 |
| Rep_625_c_135_30 | vegetarian > omnivore | 1.19458 | 0.01619 |