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Cluster: Rep_625_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_625_c_138 Rep_625_c_138_12 14592 17648 + 1.B.14.6.1
pfam Rep_625_c_138 Rep_625_c_138_13 17660 19186 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_625_c_138 Rep_625_c_138_14 19206 20162 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_625_c_138 Rep_625_c_138_15 20169 21680 + GH173
CAZyme Rep_625_c_138 Rep_625_c_138_16 21693 23129 + CE20
pfam Rep_625_c_138 Rep_625_c_138_17 23116 24522 + Arylsulfotrans | Arylsulfotran_2
CAZyme Rep_625_c_138 Rep_625_c_138_18 24546 25565 + GH130_5
TC Rep_625_c_138 Rep_625_c_138_19 25562 27157 + 2.A.21.3.19
CAZyme Rep_625_c_138 Rep_625_c_138_20 27452 28933 - GH173
Gene ID: Rep_625_c_138_12
Type: TC
Location: 14592 - 17648 (+)
Gene ID: Rep_625_c_138_13
Type: pfam
Location: 17660 - 19186 (+)
Gene ID: Rep_625_c_138_14
Type:
Location: 19206 - 20162 (+)
Gene ID: Rep_625_c_138_15
Type: CAZyme
Location: 20169 - 21680 (+)
Gene ID: Rep_625_c_138_16
Type: CAZyme
Location: 21693 - 23129 (+)
Gene ID: Rep_625_c_138_17
Type: pfam
Location: 23116 - 24522 (+)
Gene ID: Rep_625_c_138_18
Type: CAZyme
Location: 24546 - 25565 (+)
Gene ID: Rep_625_c_138_19
Type: TC
Location: 25562 - 27157 (+)
Gene ID: Rep_625_c_138_20
Type: CAZyme
Location: 27452 - 28933 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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