Genome Details
Selected Rep_genome_ID: Rep_234
Total Genomes Found: 6
Total Genomes Found: 6
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900546535
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A104.bin_57 | 4,260,175 | 93.07% | 3.91% | China(Inner Mongolia) | Asia | IMGG |
| CGMR089741 | 3,340,046 | 93.3% | 1.13% | China | Asia | CGMR |
| HRGMv2_0216 | 3,269,094 | 97.4% | 0.675% | United Kingdom | Europe | HRGM |
| MGYG000000644 | 3,556,677 | 97.65% | 1.69% | Madagascar | Africa | UHGG |
| Rep_234 | 3,215,406 | 98.0997% | 0.337838% | NA | NA | WIS |
| SW219_bin.28_sub | 3,526,758 | 96.79% | 0.68% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_234_CGC1 | CGCFAM_00023 | Yes | 6 | 2 | |
| Rep_234_CGC19 | CGCFAM_00031 | Yes | 8 | 2 | pectin/galactan |
| Rep_234_CGC18 | CGCFAM_00044 | Yes | 7 | 4 | beta-mannan/xylan/beta-glucan |
| Rep_234_CGC13 | CGCFAM_00108 | Yes | 9 | 3 | pectin |
| Rep_234_CGC29 | CGCFAM_00186 | Yes | 5 | 2 | |
| Rep_234_CGC32 | CGCFAM_00239 | Yes | 11 | 6 | xylan |
| Rep_234_CGC22 | CGCFAM_00576 | Yes | 7 | 1 | |
| Rep_234_CGC43 | CGCFAM_00925 | Yes | 7 | 3 | beta-glucan |
| Rep_234_CGC33 | CGCFAM_01240 | Yes | 5 | 4 | beta-glucan |
| Rep_234_CGC17 | CGCFAM_01244 | Yes | 6 | 3 | pectin |
| Rep_234_CGC16 | CGCFAM_01303 | Yes | 10 | 4 | |
| Rep_234_CGC12 | CGCFAM_03209 | Yes | 7 | 3 | |
| Rep_234_CGC2 | CGCFAM_04201 | Yes | 9 | 6 | |
| Rep_234_CGC26 | CGCFAM_04805 | Yes | 9 | 2 | |
| Rep_234_CGC10 | CGCFAM_05959 | Yes | 3 | 2 | |
| PUL0763_Rep_234_C0 | CGCFAM_06461 | Yes | 4 | 3 | beta-glucan |
| Rep_234_CGC35 | CGCFAM_07293 | Yes | 4 | 1 | |
| Rep_234_CGC8 | CGCFAM_10988 | Yes | 3 | 2 |
Top CAZyme Families