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Cluster: Rep_234_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_234_c_63 Rep_234_c_63_4 3917 7123 + 1.B.14.6.1
pfam Rep_234_c_63 Rep_234_c_63_5 7173 8930 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_234_c_63 Rep_234_c_63_6 9016 10995 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_234_c_63 Rep_234_c_63_7 11145 13775 + GH43_4
CAZyme Rep_234_c_63 Rep_234_c_63_8 13835 14866 + GH43_5
pfam Rep_234_c_63 Rep_234_c_63_9 15886 16401 - DUF481
NULL(UNKNOWN) Rep_234_c_63 Rep_234_c_63_10 16571 16768 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_234_c_63 Rep_234_c_63_11 17022 19463 - GH51_2
TC Rep_234_c_63 Rep_234_c_63_12 19677 20249 - 2.A.51.1.6
Gene ID: Rep_234_c_63_4
Type: TC
Location: 3917 - 7123 (+)
Gene ID: Rep_234_c_63_5
Type: pfam
Location: 7173 - 8930 (+)
Gene ID: Rep_234_c_63_6
Type:
Location: 9016 - 10995 (+)
Gene ID: Rep_234_c_63_7
Type: CAZyme
Location: 11145 - 13775 (+)
Gene ID: Rep_234_c_63_8
Type: CAZyme
Location: 13835 - 14866 (+)
Gene ID: Rep_234_c_63_9
Type: pfam
Location: 15886 - 16401 (-)
Gene ID: Rep_234_c_63_10
Type:
Location: 16571 - 16768 (-)
Gene ID: Rep_234_c_63_11
Type: CAZyme
Location: 17022 - 19463 (-)
Gene ID: Rep_234_c_63_12
Type: TC
Location: 19677 - 20249 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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