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Cluster: Rep_234_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_234_c_198 Rep_234_c_198_15 16988 18286 + GH5_4
NULL(UNKNOWN) Rep_234_c_198 Rep_234_c_198_16 18765 19784 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_234_c_198 Rep_234_c_198_17 20028 23234 + 1.B.14.6.1
pfam Rep_234_c_198 Rep_234_c_198_18 23286 25079 + SusD_RagB | SusD-like_3
pfam Rep_234_c_198 Rep_234_c_198_19 25113 26753 + SGBP_B_XBD
CAZyme Rep_234_c_198 Rep_234_c_198_20 26767 28323 + GH5_4
CAZyme Rep_234_c_198 Rep_234_c_198_21 28508 29848 + CE7
Gene ID: Rep_234_c_198_15
Type: CAZyme
Location: 16988 - 18286 (+)
Gene ID: Rep_234_c_198_16
Type:
Location: 18765 - 19784 (+)
Gene ID: Rep_234_c_198_17
Type: TC
Location: 20028 - 23234 (+)
Gene ID: Rep_234_c_198_18
Type: pfam
Location: 23286 - 25079 (+)
Gene ID: Rep_234_c_198_19
Type: pfam
Location: 25113 - 26753 (+)
Gene ID: Rep_234_c_198_20
Type: CAZyme
Location: 26767 - 28323 (+)
Gene ID: Rep_234_c_198_21
Type: CAZyme
Location: 28508 - 29848 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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