Cluster: Rep_234_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_234
- CGC Family ID: CGCFAM_00023
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_234_c_2 | Rep_234_c_2_6 | 8122 | 10116 | - | 1.B.14.6.1 |
| TC | Rep_234_c_2 | Rep_234_c_2_7 | 10156 | 11121 | - | 1.B.14.6.1 |
| TF | Rep_234_c_2 | Rep_234_c_2_8 | 11347 | 12561 | - | TrmB |
| STP | Rep_234_c_2 | Rep_234_c_2_9 | 13038 | 15029 | + | PIG-L |
| CAZyme | Rep_234_c_2 | Rep_234_c_2_10 | 15061 | 17403 | + | GH20 |
| CAZyme | Rep_234_c_2 | Rep_234_c_2_11 | 17420 | 20572 | + | GH2 |
Gene ID: Rep_234_c_2_6
Type: TC
Location: 8122 - 10116 (-)
Type: TC
Location: 8122 - 10116 (-)
Gene ID: Rep_234_c_2_7
Type: TC
Location: 10156 - 11121 (-)
Type: TC
Location: 10156 - 11121 (-)
Gene ID: Rep_234_c_2_8
Type: TF
Location: 11347 - 12561 (-)
Type: TF
Location: 11347 - 12561 (-)
Gene ID: Rep_234_c_2_9
Type: STP
Location: 13038 - 15029 (+)
Type: STP
Location: 13038 - 15029 (+)
Gene ID: Rep_234_c_2_10
Type: CAZyme
Location: 15061 - 17403 (+)
Type: CAZyme
Location: 15061 - 17403 (+)
Gene ID: Rep_234_c_2_11
Type: CAZyme
Location: 17420 - 20572 (+)
Type: CAZyme
Location: 17420 - 20572 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900546535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_234_c_2_6 | vegetarian > vegan | 1.89323 | 0.00424 |
| Rep_234_c_2_7 | vegetarian > omnivore | 1.49693 | 0.01057 |
| Rep_234_c_2_7 | vegetarian > vegan | 1.55094 | 0.00424 |
| Rep_234_c_2_8 | vegetarian > vegan | 1.39366 | 0.00424 |