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Cluster: Rep_234_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_234_c_83 Rep_234_c_83_33 21920 24520 + 1.B.18.1.2
pfam Rep_234_c_83 Rep_234_c_83_34 24569 25627 + Wzz
pfam Rep_234_c_83 Rep_234_c_83_35 25641 26753 + EpsG
TC Rep_234_c_83 Rep_234_c_83_36 26758 28191 + 2.A.66.2.22
CAZyme Rep_234_c_83 Rep_234_c_83_37 28225 29109 + GT2
CAZyme Rep_234_c_83 Rep_234_c_83_38 29122 30093 + GT4
CAZyme Rep_234_c_83 Rep_234_c_83_39 30125 31216 + GT4
CAZyme Rep_234_c_83 Rep_234_c_83_40 31213 31968 - GT2
TC Rep_234_c_83 Rep_234_c_83_41 32175 33275 + 9.B.146.1.4
TC Rep_234_c_83 Rep_234_c_83_42 33272 33898 + 9.B.18.1.3
Gene ID: Rep_234_c_83_33
Type: TC
Location: 21920 - 24520 (+)
Gene ID: Rep_234_c_83_34
Type: pfam
Location: 24569 - 25627 (+)
Gene ID: Rep_234_c_83_35
Type: pfam
Location: 25641 - 26753 (+)
Gene ID: Rep_234_c_83_36
Type: TC
Location: 26758 - 28191 (+)
Gene ID: Rep_234_c_83_37
Type: CAZyme
Location: 28225 - 29109 (+)
Gene ID: Rep_234_c_83_38
Type: CAZyme
Location: 29122 - 30093 (+)
Gene ID: Rep_234_c_83_39
Type: CAZyme
Location: 30125 - 31216 (+)
Gene ID: Rep_234_c_83_40
Type: CAZyme
Location: 31213 - 31968 (-)
Gene ID: Rep_234_c_83_41
Type: TC
Location: 32175 - 33275 (+)
Gene ID: Rep_234_c_83_42
Type: TC
Location: 33272 - 33898 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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