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Cluster: Rep_234_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_234_c_111 Rep_234_c_111_9 7742 9031 + 2.A.1.14.25
pfam Rep_234_c_111 Rep_234_c_111_10 9082 9999 + DHDPS
pfam Rep_234_c_111 Rep_234_c_111_11 10029 11216 + GlcNAc_2-epim
CAZyme Rep_234_c_111 Rep_234_c_111_12 11237 12514 + GH33
pfam Rep_234_c_111 Rep_234_c_111_13 13025 14095 + NANM
pfam Rep_234_c_111 Rep_234_c_111_14 14366 14722 + P-II
TC Rep_234_c_111 Rep_234_c_111_15 14787 16049 + 1.A.11.2.7
Gene ID: Rep_234_c_111_9
Type: TC
Location: 7742 - 9031 (+)
Gene ID: Rep_234_c_111_10
Type: pfam
Location: 9082 - 9999 (+)
Gene ID: Rep_234_c_111_11
Type: pfam
Location: 10029 - 11216 (+)
Gene ID: Rep_234_c_111_12
Type: CAZyme
Location: 11237 - 12514 (+)
Gene ID: Rep_234_c_111_13
Type: pfam
Location: 13025 - 14095 (+)
Gene ID: Rep_234_c_111_14
Type: pfam
Location: 14366 - 14722 (+)
Gene ID: Rep_234_c_111_15
Type: TC
Location: 14787 - 16049 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_234_c_111_13 vegetarian > vegan 4.58182 0.00424

🧭 Explore Read Mapping of CGC

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