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Cluster: Rep_234_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_234_c_88 Rep_234_c_88_19 18793 20157 + 2.A.22.5.3
TC Rep_234_c_88 Rep_234_c_88_20 20235 21590 + 2.A.22.5.3
pfam Rep_234_c_88 Rep_234_c_88_21 21692 22636 - HHH_3 | HHH_3 | HHH_3
TC Rep_234_c_88 Rep_234_c_88_22 23477 26446 + 1.B.14.6.1
TC Rep_234_c_88 Rep_234_c_88_23 26465 28132 + 8.A.46.1.1
pfam Rep_234_c_88 Rep_234_c_88_24 28145 29533 + SusE | DUF5111 | DUF5114
CAZyme Rep_234_c_88 Rep_234_c_88_25 29658 30734 + GH53
CAZyme Rep_234_c_88 Rep_234_c_88_26 30825 33284 + GH2
Gene ID: Rep_234_c_88_19
Type: TC
Location: 18793 - 20157 (+)
Gene ID: Rep_234_c_88_20
Type: TC
Location: 20235 - 21590 (+)
Gene ID: Rep_234_c_88_21
Type: pfam
Location: 21692 - 22636 (-)
Gene ID: Rep_234_c_88_22
Type: TC
Location: 23477 - 26446 (+)
Gene ID: Rep_234_c_88_23
Type: TC
Location: 26465 - 28132 (+)
Gene ID: Rep_234_c_88_24
Type: pfam
Location: 28145 - 29533 (+)
Gene ID: Rep_234_c_88_25
Type: CAZyme
Location: 29658 - 30734 (+)
Gene ID: Rep_234_c_88_26
Type: CAZyme
Location: 30825 - 33284 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_234_c_88_20 vegetarian > vegan 1.30637 0.00424
Rep_234_c_88_22 vegan > omnivore 1.63070 0.00701
Rep_234_c_88_22 vegetarian > omnivore 1.59479 0.01057
Rep_234_c_88_23 vegetarian > omnivore 2.22332 0.01057
Rep_234_c_88_24 vegetarian > omnivore 1.38274 0.01057

🧭 Explore Read Mapping of CGC

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