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Cluster: Rep_234_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_234_c_145 Rep_234_c_145_1 3 1295 + GH43_16
sulfatase Rep_234_c_145 Rep_234_c_145_2 1603 3033 + S1_8
CAZyme Rep_234_c_145 Rep_234_c_145_3 3100 5004 + CE1 | CE6
TC Rep_234_c_145 Rep_234_c_145_4 5269 8370 + 1.B.14.6.1
pfam Rep_234_c_145 Rep_234_c_145_5 8390 10192 + SusD_RagB | SusD-like_3
CAZyme Rep_234_c_145 Rep_234_c_145_6 10305 12821 + GH43_2 | GH8
NULL(UNKNOWN) Rep_234_c_145 Rep_234_c_145_7 12835 13539 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_234_c_145 Rep_234_c_145_8 13560 15050 + GH43_7
pfam Rep_234_c_145 Rep_234_c_145_9 15411 16022 + Bac_DNA_binding | HU-HIG
CAZyme Rep_234_c_145 Rep_234_c_145_10 16081 18618 + GH31_4
CAZyme Rep_234_c_145 Rep_234_c_145_11 18733 21339 + GH3
Gene ID: Rep_234_c_145_1
Type: CAZyme
Location: 3 - 1295 (+)
Gene ID: Rep_234_c_145_2
Type: sulfatase
Location: 1603 - 3033 (+)
Gene ID: Rep_234_c_145_3
Type: CAZyme
Location: 3100 - 5004 (+)
Gene ID: Rep_234_c_145_4
Type: TC
Location: 5269 - 8370 (+)
Gene ID: Rep_234_c_145_5
Type: pfam
Location: 8390 - 10192 (+)
Gene ID: Rep_234_c_145_6
Type: CAZyme
Location: 10305 - 12821 (+)
Gene ID: Rep_234_c_145_7
Type:
Location: 12835 - 13539 (+)
Gene ID: Rep_234_c_145_8
Type: CAZyme
Location: 13560 - 15050 (+)
Gene ID: Rep_234_c_145_9
Type: pfam
Location: 15411 - 16022 (+)
Gene ID: Rep_234_c_145_10
Type: CAZyme
Location: 16081 - 18618 (+)
Gene ID: Rep_234_c_145_11
Type: CAZyme
Location: 18733 - 21339 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_234_c_145_9 vegetarian > vegan 3.40355 0.00424

🧭 Explore Read Mapping of CGC

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