Genome Details
Selected Rep_genome_ID: HRGMv2_4775
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| BF113_44 | 2,194,682 | 93.57% | 1.28% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_4775 | 2,356,123 | 98.95% | 0.024% | Tanzania | Africa | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4775_CGC7 | CGCFAM_00153 | Yes | 6 | 1 | |
| HRGMv2_4775_CGC10 | CGCFAM_00382 | Yes | 5 | 2 | |
| HRGMv2_4775_CGC13 | CGCFAM_01618 | Yes | 5 | 2 | |
| HRGMv2_4775_CGC3 | CGCFAM_02819 | Yes | 4 | 1 | |
| HRGMv2_4775_CGC4 | CGCFAM_04113 | Yes | 11 | 1 | |
| HRGMv2_4775_CGC22 | CGCFAM_06291 | Yes | 5 | 1 | |
| HRGMv2_4775_CGC17 | CGCFAM_06292 | Yes | 10 | 1 | |
| HRGMv2_4775_CGC11 | CGCFAM_10677 | Yes | 5 | 1 | |
| HRGMv2_4775_CGC1 | CGCFAM_10679 | Yes | 15 | 1 | |
| HRGMv2_4775_CGC8 | CGCFAM_10680 | Yes | 9 | 3 | |
| HRGMv2_4775_CGC21 | CGCFAM_10681 | Yes | 6 | 1 |
Top CAZyme Families