Cluster: HRGMv2_4775_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_04113
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_3 | HRGMv2_4775_3_124 | 147999 | 148580 | - | 2.A.51.1.6 |
| TC | HRGMv2_4775_3 | HRGMv2_4775_3_125 | 148582 | 149166 | - | 2.A.51.1.6 |
| TC | HRGMv2_4775_3 | HRGMv2_4775_3_126 | 149177 | 150043 | - | 3.A.1.1.45 |
| TC | HRGMv2_4775_3 | HRGMv2_4775_3_127 | 150043 | 151575 | - | 3.A.1.1.45 |
| TC | HRGMv2_4775_3 | HRGMv2_4775_3_128 | 151765 | 153042 | - | 3.A.1.1.44 |
| pfam | HRGMv2_4775_3 | HRGMv2_4775_3_129 | 153173 | 153730 | - | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 |
| NULL(UNKNOWN) | HRGMv2_4775_3 | HRGMv2_4775_3_130 | 153731 | 153970 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4775_3 | HRGMv2_4775_3_131 | 154132 | 156273 | - | 9.A.25.1.1 |
| CAZyme | HRGMv2_4775_3 | HRGMv2_4775_3_132 | 156545 | 158602 | - | GH13_36 |
| NULL(UNKNOWN) | HRGMv2_4775_3 | HRGMv2_4775_3_133 | 158589 | 158723 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4775_3 | HRGMv2_4775_3_134 | 158754 | 160277 | - | 9.A.25.1.1 |
Gene ID: HRGMv2_4775_3_124
Type: TC
Location: 147999 - 148580 (-)
Type: TC
Location: 147999 - 148580 (-)
Gene ID: HRGMv2_4775_3_125
Type: TC
Location: 148582 - 149166 (-)
Type: TC
Location: 148582 - 149166 (-)
Gene ID: HRGMv2_4775_3_126
Type: TC
Location: 149177 - 150043 (-)
Type: TC
Location: 149177 - 150043 (-)
Gene ID: HRGMv2_4775_3_127
Type: TC
Location: 150043 - 151575 (-)
Type: TC
Location: 150043 - 151575 (-)
Gene ID: HRGMv2_4775_3_128
Type: TC
Location: 151765 - 153042 (-)
Type: TC
Location: 151765 - 153042 (-)
Gene ID: HRGMv2_4775_3_129
Type: pfam
Location: 153173 - 153730 (-)
Type: pfam
Location: 153173 - 153730 (-)
Gene ID: HRGMv2_4775_3_130
Type:
Location: 153731 - 153970 (-)
Type:
Location: 153731 - 153970 (-)
Gene ID: HRGMv2_4775_3_131
Type: TC
Location: 154132 - 156273 (-)
Type: TC
Location: 154132 - 156273 (-)
Gene ID: HRGMv2_4775_3_132
Type: CAZyme
Location: 156545 - 158602 (-)
Type: CAZyme
Location: 156545 - 158602 (-)
Gene ID: HRGMv2_4775_3_133
Type:
Location: 158589 - 158723 (-)
Type:
Location: 158589 - 158723 (-)
Gene ID: HRGMv2_4775_3_134
Type: TC
Location: 158754 - 160277 (-)
Type: TC
Location: 158754 - 160277 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.