Cluster: HRGMv2_4775_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_02819
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_2 | HRGMv2_4775_2_84 | 94322 | 96457 | - | 1.I.1.1.3 |
| pfam | HRGMv2_4775_2 | HRGMv2_4775_2_85 | 96659 | 97339 | + | CarD_TRCF_RID | CarD_C |
| pfam | HRGMv2_4775_2 | HRGMv2_4775_2_86 | 97329 | 98516 | + | IspD | YgbB | NTP_transf_3 |
| CAZyme | HRGMv2_4775_2 | HRGMv2_4775_2_87 | 98647 | 100050 | - | GH13_28 |
Gene ID: HRGMv2_4775_2_84
Type: TC
Location: 94322 - 96457 (-)
Type: TC
Location: 94322 - 96457 (-)
Gene ID: HRGMv2_4775_2_85
Type: pfam
Location: 96659 - 97339 (+)
Type: pfam
Location: 96659 - 97339 (+)
Gene ID: HRGMv2_4775_2_86
Type: pfam
Location: 97329 - 98516 (+)
Type: pfam
Location: 97329 - 98516 (+)
Gene ID: HRGMv2_4775_2_87
Type: CAZyme
Location: 98647 - 100050 (-)
Type: CAZyme
Location: 98647 - 100050 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.