Cluster: HRGMv2_4775_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_00382
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4775_5 | HRGMv2_4775_5_87 | 82715 | 83677 | - | GT8 |
| CAZyme | HRGMv2_4775_5 | HRGMv2_4775_5_88 | 83682 | 84227 | - | GT111 |
| NULL(UNKNOWN) | HRGMv2_4775_5 | HRGMv2_4775_5_89 | 84356 | 84613 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4775_5 | HRGMv2_4775_5_90 | 84621 | 85022 | + | PIN |
| TC | HRGMv2_4775_5 | HRGMv2_4775_5_91 | 85195 | 86643 | - | 2.A.66.2.16 |
Gene ID: HRGMv2_4775_5_87
Type: CAZyme
Location: 82715 - 83677 (-)
Type: CAZyme
Location: 82715 - 83677 (-)
Gene ID: HRGMv2_4775_5_88
Type: CAZyme
Location: 83682 - 84227 (-)
Type: CAZyme
Location: 83682 - 84227 (-)
Gene ID: HRGMv2_4775_5_89
Type:
Location: 84356 - 84613 (+)
Type:
Location: 84356 - 84613 (+)
Gene ID: HRGMv2_4775_5_90
Type: pfam
Location: 84621 - 85022 (+)
Type: pfam
Location: 84621 - 85022 (+)
Gene ID: HRGMv2_4775_5_91
Type: TC
Location: 85195 - 86643 (-)
Type: TC
Location: 85195 - 86643 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.