Cluster: HRGMv2_4775_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_00153
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_4 | HRGMv2_4775_4_54 | 55626 | 56333 | - | 3.A.1.4.10 |
| TC | HRGMv2_4775_4 | HRGMv2_4775_4_55 | 56335 | 57126 | - | 3.A.1.4.10 |
| TC | HRGMv2_4775_4 | HRGMv2_4775_4_56 | 57126 | 58154 | - | 3.A.1.4.8 |
| TC | HRGMv2_4775_4 | HRGMv2_4775_4_57 | 58201 | 59091 | - | 3.A.1.4.10 |
| NULL(UNKNOWN) | HRGMv2_4775_4 | HRGMv2_4775_4_58 | 59198 | 59470 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4775_4 | HRGMv2_4775_4_59 | 59862 | 62039 | - | GH13_37 |
Gene ID: HRGMv2_4775_4_54
Type: TC
Location: 55626 - 56333 (-)
Type: TC
Location: 55626 - 56333 (-)
Gene ID: HRGMv2_4775_4_55
Type: TC
Location: 56335 - 57126 (-)
Type: TC
Location: 56335 - 57126 (-)
Gene ID: HRGMv2_4775_4_56
Type: TC
Location: 57126 - 58154 (-)
Type: TC
Location: 57126 - 58154 (-)
Gene ID: HRGMv2_4775_4_57
Type: TC
Location: 58201 - 59091 (-)
Type: TC
Location: 58201 - 59091 (-)
Gene ID: HRGMv2_4775_4_58
Type:
Location: 59198 - 59470 (-)
Type:
Location: 59198 - 59470 (-)
Gene ID: HRGMv2_4775_4_59
Type: CAZyme
Location: 59862 - 62039 (-)
Type: CAZyme
Location: 59862 - 62039 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.