Cluster: HRGMv2_4775_CGC17
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_06292
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_17 | HRGMv2_4775_17_15 | 19260 | 20372 | - | 9.B.34.1.3 |
| STP | HRGMv2_4775_17 | HRGMv2_4775_17_16 | 20501 | 21850 | - | EPSP_synthase |
| pfam | HRGMv2_4775_17 | HRGMv2_4775_17_17 | 22020 | 23612 | + | AICARFT_IMPCHas |
| TC | HRGMv2_4775_17 | HRGMv2_4775_17_18 | 23621 | 24691 | + | 9.B.146.1.3 |
| peptidase | HRGMv2_4775_17 | HRGMv2_4775_17_19 | 24891 | 26120 | - | M20.UPW |
| pfam | HRGMv2_4775_17 | HRGMv2_4775_17_20 | 26142 | 27113 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| TC | HRGMv2_4775_17 | HRGMv2_4775_17_21 | 27128 | 29065 | - | 3.A.1.121.4 |
| pfam | HRGMv2_4775_17 | HRGMv2_4775_17_22 | 29073 | 30455 | - | SH3_3 |
| NULL(UNKNOWN) | HRGMv2_4775_17 | HRGMv2_4775_17_23 | 30596 | 31363 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4775_17 | HRGMv2_4775_17_24 | 31372 | 32373 | - | GT2 |
Gene ID: HRGMv2_4775_17_15
Type: TC
Location: 19260 - 20372 (-)
Type: TC
Location: 19260 - 20372 (-)
Gene ID: HRGMv2_4775_17_16
Type: STP
Location: 20501 - 21850 (-)
Type: STP
Location: 20501 - 21850 (-)
Gene ID: HRGMv2_4775_17_17
Type: pfam
Location: 22020 - 23612 (+)
Type: pfam
Location: 22020 - 23612 (+)
Gene ID: HRGMv2_4775_17_18
Type: TC
Location: 23621 - 24691 (+)
Type: TC
Location: 23621 - 24691 (+)
Gene ID: HRGMv2_4775_17_19
Type: peptidase
Location: 24891 - 26120 (-)
Type: peptidase
Location: 24891 - 26120 (-)
Gene ID: HRGMv2_4775_17_20
Type: pfam
Location: 26142 - 27113 (-)
Type: pfam
Location: 26142 - 27113 (-)
Gene ID: HRGMv2_4775_17_21
Type: TC
Location: 27128 - 29065 (-)
Type: TC
Location: 27128 - 29065 (-)
Gene ID: HRGMv2_4775_17_22
Type: pfam
Location: 29073 - 30455 (-)
Type: pfam
Location: 29073 - 30455 (-)
Gene ID: HRGMv2_4775_17_23
Type:
Location: 30596 - 31363 (+)
Type:
Location: 30596 - 31363 (+)
Gene ID: HRGMv2_4775_17_24
Type: CAZyme
Location: 31372 - 32373 (-)
Type: CAZyme
Location: 31372 - 32373 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.