Cluster: HRGMv2_4775_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_06291
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_25 | HRGMv2_4775_25_22 | 23412 | 24530 | - | 9.A.23.1.1 |
| NULL(UNKNOWN) | HRGMv2_4775_25 | HRGMv2_4775_25_23 | 24844 | 25377 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4775_25 | HRGMv2_4775_25_24 | 25438 | 26700 | + | Aldedh |
| CAZyme | HRGMv2_4775_25 | HRGMv2_4775_25_25 | 26671 | 27756 | - | GH18 |
| TC | HRGMv2_4775_25 | HRGMv2_4775_25_26 | 27758 | 29383 | - | 3.A.1.105.12 |
Gene ID: HRGMv2_4775_25_22
Type: TC
Location: 23412 - 24530 (-)
Type: TC
Location: 23412 - 24530 (-)
Gene ID: HRGMv2_4775_25_23
Type:
Location: 24844 - 25377 (+)
Type:
Location: 24844 - 25377 (+)
Gene ID: HRGMv2_4775_25_24
Type: pfam
Location: 25438 - 26700 (+)
Type: pfam
Location: 25438 - 26700 (+)
Gene ID: HRGMv2_4775_25_25
Type: CAZyme
Location: 26671 - 27756 (-)
Type: CAZyme
Location: 26671 - 27756 (-)
Gene ID: HRGMv2_4775_25_26
Type: TC
Location: 27758 - 29383 (-)
Type: TC
Location: 27758 - 29383 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.