Cluster: HRGMv2_4775_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_01618
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4775_14 | HRGMv2_4775_14_17 | 18279 | 21002 | + | GH13_14 |
| TC | HRGMv2_4775_14 | HRGMv2_4775_14_18 | 21063 | 22241 | + | 3.A.1.1.6 |
| TC | HRGMv2_4775_14 | HRGMv2_4775_14_19 | 22350 | 24470 | + | 3.A.1.1.6 |
| TC | HRGMv2_4775_14 | HRGMv2_4775_14_20 | 24467 | 25543 | + | 3.A.1.1.6 |
| CAZyme | HRGMv2_4775_14 | HRGMv2_4775_14_21 | 25786 | 27558 | + | GH13_36 |
Gene ID: HRGMv2_4775_14_17
Type: CAZyme
Location: 18279 - 21002 (+)
Type: CAZyme
Location: 18279 - 21002 (+)
Gene ID: HRGMv2_4775_14_18
Type: TC
Location: 21063 - 22241 (+)
Type: TC
Location: 21063 - 22241 (+)
Gene ID: HRGMv2_4775_14_19
Type: TC
Location: 22350 - 24470 (+)
Type: TC
Location: 22350 - 24470 (+)
Gene ID: HRGMv2_4775_14_20
Type: TC
Location: 24467 - 25543 (+)
Type: TC
Location: 24467 - 25543 (+)
Gene ID: HRGMv2_4775_14_21
Type: CAZyme
Location: 25786 - 27558 (+)
Type: CAZyme
Location: 25786 - 27558 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.