Cluster: HRGMv2_4775_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_10681
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_25 | HRGMv2_4775_25_3 | 1837 | 3162 | + | 1.B.6.1.15 |
| pfam | HRGMv2_4775_25 | HRGMv2_4775_25_4 | 3221 | 4006 | + | SpoU_methylase | SpoU_sub_bind |
| TC | HRGMv2_4775_25 | HRGMv2_4775_25_5 | 4039 | 5094 | - | 3.A.1.20.1 |
| TC | HRGMv2_4775_25 | HRGMv2_4775_25_6 | 5088 | 6746 | - | 3.A.1.20.3 |
| TC | HRGMv2_4775_25 | HRGMv2_4775_25_7 | 6748 | 7749 | - | 3.A.1.20.2 |
| CAZyme | HRGMv2_4775_25 | HRGMv2_4775_25_8 | 8213 | 9268 | + | GH53 |
Gene ID: HRGMv2_4775_25_3
Type: TC
Location: 1837 - 3162 (+)
Type: TC
Location: 1837 - 3162 (+)
Gene ID: HRGMv2_4775_25_4
Type: pfam
Location: 3221 - 4006 (+)
Type: pfam
Location: 3221 - 4006 (+)
Gene ID: HRGMv2_4775_25_5
Type: TC
Location: 4039 - 5094 (-)
Type: TC
Location: 4039 - 5094 (-)
Gene ID: HRGMv2_4775_25_6
Type: TC
Location: 5088 - 6746 (-)
Type: TC
Location: 5088 - 6746 (-)
Gene ID: HRGMv2_4775_25_7
Type: TC
Location: 6748 - 7749 (-)
Type: TC
Location: 6748 - 7749 (-)
Gene ID: HRGMv2_4775_25_8
Type: CAZyme
Location: 8213 - 9268 (+)
Type: CAZyme
Location: 8213 - 9268 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.