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Cluster: HRGMv2_4775_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4775_4 HRGMv2_4775_4_71 75006 76703 - 2.A.53.3.9
STP HRGMv2_4775_4 HRGMv2_4775_4_72 77040 77243 - HMA
TC HRGMv2_4775_4 HRGMv2_4775_4_73 77265 79547 - 3.A.3.5.15
pfam HRGMv2_4775_4 HRGMv2_4775_4_74 79752 80432 + DTW
CAZyme HRGMv2_4775_4 HRGMv2_4775_4_75 80656 82377 - GH3
STP HRGMv2_4775_4 HRGMv2_4775_4_76 82403 83329 - Pyr_redox_2
TC HRGMv2_4775_4 HRGMv2_4775_4_77 83626 85068 + 2.A.25.1.4
CAZyme HRGMv2_4775_4 HRGMv2_4775_4_78 85155 87653 - GT35
CAZyme HRGMv2_4775_4 HRGMv2_4775_4_79 87847 89958 - GH13_11
Gene ID: HRGMv2_4775_4_71
Type: TC
Location: 75006 - 76703 (-)
Gene ID: HRGMv2_4775_4_72
Type: STP
Location: 77040 - 77243 (-)
Gene ID: HRGMv2_4775_4_73
Type: TC
Location: 77265 - 79547 (-)
Gene ID: HRGMv2_4775_4_74
Type: pfam
Location: 79752 - 80432 (+)
Gene ID: HRGMv2_4775_4_75
Type: CAZyme
Location: 80656 - 82377 (-)
Gene ID: HRGMv2_4775_4_76
Type: STP
Location: 82403 - 83329 (-)
Gene ID: HRGMv2_4775_4_77
Type: TC
Location: 83626 - 85068 (+)
Gene ID: HRGMv2_4775_4_78
Type: CAZyme
Location: 85155 - 87653 (-)
Gene ID: HRGMv2_4775_4_79
Type: CAZyme
Location: 87847 - 89958 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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