Cluster: HRGMv2_4775_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4775
- CGC Family ID: CGCFAM_10677
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4775_6 | HRGMv2_4775_6_55 | 66315 | 67640 | - | 9.B.1.1.2 |
| TF | HRGMv2_4775_6 | HRGMv2_4775_6_56 | 67717 | 69147 | + | GntR |
| CAZyme | HRGMv2_4775_6 | HRGMv2_4775_6_57 | 69219 | 70346 | - | GT104 |
| TC | HRGMv2_4775_6 | HRGMv2_4775_6_58 | 70352 | 71131 | - | 2.A.5.5.2 |
| TC | HRGMv2_4775_6 | HRGMv2_4775_6_59 | 71128 | 71928 | - | 9.B.10.1.1 |
Gene ID: HRGMv2_4775_6_55
Type: TC
Location: 66315 - 67640 (-)
Type: TC
Location: 66315 - 67640 (-)
Gene ID: HRGMv2_4775_6_56
Type: TF
Location: 67717 - 69147 (+)
Type: TF
Location: 67717 - 69147 (+)
Gene ID: HRGMv2_4775_6_57
Type: CAZyme
Location: 69219 - 70346 (-)
Type: CAZyme
Location: 69219 - 70346 (-)
Gene ID: HRGMv2_4775_6_58
Type: TC
Location: 70352 - 71131 (-)
Type: TC
Location: 70352 - 71131 (-)
Gene ID: HRGMv2_4775_6_59
Type: TC
Location: 71128 - 71928 (-)
Type: TC
Location: 71128 - 71928 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.