dbCAN Logo

Cluster: HRGMv2_4775_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4775_1 HRGMv2_4775_1_11 12427 13311 + 3.A.5.1.1
NULL(UNKNOWN) HRGMv2_4775_1 HRGMv2_4775_1_12 13313 14491 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4775_1 HRGMv2_4775_1_13 14481 15791 + 3.A.1.125.1
TC HRGMv2_4775_1 HRGMv2_4775_1_14 15784 16467 + 3.A.1.125.1
TC HRGMv2_4775_1 HRGMv2_4775_1_15 16464 17795 + 3.A.1.125.1
pfam HRGMv2_4775_1 HRGMv2_4775_1_16 17907 18455 + UVR
pfam HRGMv2_4775_1 HRGMv2_4775_1_17 18452 19555 + ATP-gua_Ptrans
TC HRGMv2_4775_1 HRGMv2_4775_1_18 19552 22266 + 3.A.9.1.2
STP HRGMv2_4775_1 HRGMv2_4775_1_19 22263 23570 + Aminotran_1_2
TC HRGMv2_4775_1 HRGMv2_4775_1_20 23660 24322 + 3.A.1.3.10
TC HRGMv2_4775_1 HRGMv2_4775_1_21 24300 25001 + 3.A.1.3.25
TC HRGMv2_4775_1 HRGMv2_4775_1_22 25067 25828 + 3.A.1.3.4
TC HRGMv2_4775_1 HRGMv2_4775_1_23 26013 26837 + 3.A.1.3.27
NULL(UNKNOWN) HRGMv2_4775_1 HRGMv2_4775_1_24 27134 27928 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4775_1 HRGMv2_4775_1_25 27944 30808 + GH13_14
Gene ID: HRGMv2_4775_1_11
Type: TC
Location: 12427 - 13311 (+)
Gene ID: HRGMv2_4775_1_12
Type:
Location: 13313 - 14491 (+)
Gene ID: HRGMv2_4775_1_13
Type: TC
Location: 14481 - 15791 (+)
Gene ID: HRGMv2_4775_1_14
Type: TC
Location: 15784 - 16467 (+)
Gene ID: HRGMv2_4775_1_15
Type: TC
Location: 16464 - 17795 (+)
Gene ID: HRGMv2_4775_1_16
Type: pfam
Location: 17907 - 18455 (+)
Gene ID: HRGMv2_4775_1_17
Type: pfam
Location: 18452 - 19555 (+)
Gene ID: HRGMv2_4775_1_18
Type: TC
Location: 19552 - 22266 (+)
Gene ID: HRGMv2_4775_1_19
Type: STP
Location: 22263 - 23570 (+)
Gene ID: HRGMv2_4775_1_20
Type: TC
Location: 23660 - 24322 (+)
Gene ID: HRGMv2_4775_1_21
Type: TC
Location: 24300 - 25001 (+)
Gene ID: HRGMv2_4775_1_22
Type: TC
Location: 25067 - 25828 (+)
Gene ID: HRGMv2_4775_1_23
Type: TC
Location: 26013 - 26837 (+)
Gene ID: HRGMv2_4775_1_24
Type:
Location: 27134 - 27928 (+)
Gene ID: HRGMv2_4775_1_25
Type: CAZyme
Location: 27944 - 30808 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List