Genome Details
Selected Rep_genome_ID: HRGMv2_2720
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_D
Species
Ruminococcus_D sp900539095
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| BF087_bin.80 | 2,361,233 | 97.49% | 0% | NA | Africa | H3AfricaPhase2 |
| BF346_50 | 2,731,609 | 98.46% | 0.75% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_2720 | 2,551,143 | 99.31% | 0% | Ghana | Africa | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2720_CGC29 | CGCFAM_00005 | Yes | 4 | 2 | |
| HRGMv2_2720_CGC15 | CGCFAM_00083 | Yes | 5 | 2 | beta-glucan |
| HRGMv2_2720_CGC1 | CGCFAM_03454 | Yes | 8 | 3 | |
| HRGMv2_2720_CGC5 | CGCFAM_04963 | Yes | 14 | 2 | |
| HRGMv2_2720_CGC24 | CGCFAM_05249 | Yes | 7 | 2 | |
| HRGMv2_2720_CGC4 | CGCFAM_05250 | Yes | 19 | 4 | |
| HRGMv2_2720_CGC21 | CGCFAM_07998 | Yes | 6 | 1 | |
| HRGMv2_2720_CGC9 | CGCFAM_08000 | Yes | 6 | 2 | |
| HRGMv2_2720_CGC26 | CGCFAM_10156 | Yes | 4 | 1 | |
| HRGMv2_2720_CGC7 | CGCFAM_10157 | Yes | 5 | 1 | |
| HRGMv2_2720_CGC8 | CGCFAM_10158 | Yes | 4 | 1 |
Top CAZyme Families