Cluster: HRGMv2_2720_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2720
- CGC Family ID: CGCFAM_10158
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2720_3 | HRGMv2_2720_3_106 | 117704 | 119026 | - | 2.A.66.1.33 |
| pfam | HRGMv2_2720_3 | HRGMv2_2720_3_107 | 119547 | 120242 | + | RadC | Prok-JAB |
| CAZyme | HRGMv2_2720_3 | HRGMv2_2720_3_108 | 120295 | 121920 | - | GH5_2 |
| TC | HRGMv2_2720_3 | HRGMv2_2720_3_109 | 122636 | 123376 | + | 3.A.1.144.3 |
Gene ID: HRGMv2_2720_3_106
Type: TC
Location: 117704 - 119026 (-)
Type: TC
Location: 117704 - 119026 (-)
Gene ID: HRGMv2_2720_3_107
Type: pfam
Location: 119547 - 120242 (+)
Type: pfam
Location: 119547 - 120242 (+)
Gene ID: HRGMv2_2720_3_108
Type: CAZyme
Location: 120295 - 121920 (-)
Type: CAZyme
Location: 120295 - 121920 (-)
Gene ID: HRGMv2_2720_3_109
Type: TC
Location: 122636 - 123376 (+)
Type: TC
Location: 122636 - 123376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Species
Hominimerdicola sp900539095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.