Cluster: HRGMv2_2720_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: beta-glucan
- Genome ID: HRGMv2_2720
- CGC Family ID: CGCFAM_00083
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2720_5 | HRGMv2_2720_5_1 | 178 | 1419 | + | GH2 |
| pfam | HRGMv2_2720_5 | HRGMv2_2720_5_2 | 1508 | 2689 | - | MFS_1 |
| CAZyme | HRGMv2_2720_5 | HRGMv2_2720_5_3 | 2741 | 4741 | - | GH31_4 |
| TF | HRGMv2_2720_5 | HRGMv2_2720_5_4 | 4874 | 5785 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2720_5 | HRGMv2_2720_5_5 | 6371 | 7894 | - | 9.A.8.1.3 |
Gene ID: HRGMv2_2720_5_1
Type: CAZyme
Location: 178 - 1419 (+)
Type: CAZyme
Location: 178 - 1419 (+)
Gene ID: HRGMv2_2720_5_2
Type: pfam
Location: 1508 - 2689 (-)
Type: pfam
Location: 1508 - 2689 (-)
Gene ID: HRGMv2_2720_5_3
Type: CAZyme
Location: 2741 - 4741 (-)
Type: CAZyme
Location: 2741 - 4741 (-)
Gene ID: HRGMv2_2720_5_4
Type: TF
Location: 4874 - 5785 (+)
Type: TF
Location: 4874 - 5785 (+)
Gene ID: HRGMv2_2720_5_5
Type: TC
Location: 6371 - 7894 (-)
Type: TC
Location: 6371 - 7894 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Species
Hominimerdicola sp900539095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.