Cluster: HRGMv2_2720_CGC5
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2720
- CGC Family ID: CGCFAM_04963
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2720_2 | HRGMv2_2720_2_138 | 165254 | 165925 | + | 9.B.18.1.2 |
| pfam | HRGMv2_2720_2 | HRGMv2_2720_2_139 | 166170 | 166358 | + | SASP |
| CAZyme | HRGMv2_2720_2 | HRGMv2_2720_2_140 | 166414 | 167832 | - | CE2 |
| NULL(UNKNOWN) | HRGMv2_2720_2 | HRGMv2_2720_2_141 | 168011 | 169243 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2720_2 | HRGMv2_2720_2_142 | 169377 | 171335 | - | GH13_14 |
| pfam | HRGMv2_2720_2 | HRGMv2_2720_2_143 | 171379 | 172251 | - | PS_Dcarbxylase |
| pfam | HRGMv2_2720_2 | HRGMv2_2720_2_144 | 172357 | 172986 | - | CDP-OH_P_transf |
| TC | HRGMv2_2720_2 | HRGMv2_2720_2_145 | 173003 | 174094 | - | 4.D.2.1.5 |
| pfam | HRGMv2_2720_2 | HRGMv2_2720_2_146 | 174150 | 175112 | - | Glycos_transf_4 |
| TF | HRGMv2_2720_2 | HRGMv2_2720_2_147 | 175340 | 176314 | + | HTH_11 |
| TC | HRGMv2_2720_2 | HRGMv2_2720_2_148 | 176631 | 177107 | + | 3.D.1.5.1 |
| TC | HRGMv2_2720_2 | HRGMv2_2720_2_149 | 177109 | 179001 | + | 3.D.1.5.1 |
| STP | HRGMv2_2720_2 | HRGMv2_2720_2_150 | 179010 | 180689 | + | Fer4 |
| TC | HRGMv2_2720_2 | HRGMv2_2720_2_151 | 180908 | 182065 | - | 2.A.86.1.8 |
Gene ID: HRGMv2_2720_2_138
Type: TC
Location: 165254 - 165925 (+)
Type: TC
Location: 165254 - 165925 (+)
Gene ID: HRGMv2_2720_2_139
Type: pfam
Location: 166170 - 166358 (+)
Type: pfam
Location: 166170 - 166358 (+)
Gene ID: HRGMv2_2720_2_140
Type: CAZyme
Location: 166414 - 167832 (-)
Type: CAZyme
Location: 166414 - 167832 (-)
Gene ID: HRGMv2_2720_2_141
Type:
Location: 168011 - 169243 (-)
Type:
Location: 168011 - 169243 (-)
Gene ID: HRGMv2_2720_2_142
Type: CAZyme
Location: 169377 - 171335 (-)
Type: CAZyme
Location: 169377 - 171335 (-)
Gene ID: HRGMv2_2720_2_143
Type: pfam
Location: 171379 - 172251 (-)
Type: pfam
Location: 171379 - 172251 (-)
Gene ID: HRGMv2_2720_2_144
Type: pfam
Location: 172357 - 172986 (-)
Type: pfam
Location: 172357 - 172986 (-)
Gene ID: HRGMv2_2720_2_145
Type: TC
Location: 173003 - 174094 (-)
Type: TC
Location: 173003 - 174094 (-)
Gene ID: HRGMv2_2720_2_146
Type: pfam
Location: 174150 - 175112 (-)
Type: pfam
Location: 174150 - 175112 (-)
Gene ID: HRGMv2_2720_2_147
Type: TF
Location: 175340 - 176314 (+)
Type: TF
Location: 175340 - 176314 (+)
Gene ID: HRGMv2_2720_2_148
Type: TC
Location: 176631 - 177107 (+)
Type: TC
Location: 176631 - 177107 (+)
Gene ID: HRGMv2_2720_2_149
Type: TC
Location: 177109 - 179001 (+)
Type: TC
Location: 177109 - 179001 (+)
Gene ID: HRGMv2_2720_2_150
Type: STP
Location: 179010 - 180689 (+)
Type: STP
Location: 179010 - 180689 (+)
Gene ID: HRGMv2_2720_2_151
Type: TC
Location: 180908 - 182065 (-)
Type: TC
Location: 180908 - 182065 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Species
Hominimerdicola sp900539095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.