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Cluster: HRGMv2_2720_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2720_2 HRGMv2_2720_2_42 50745 52244 - CE20
pfam HRGMv2_2720_2 HRGMv2_2720_2_43 52340 52837 - Acetyltransf_1 | Acetyltransf_4 | Acetyltransf_7 | Acetyltransf_10
pfam HRGMv2_2720_2 HRGMv2_2720_2_44 52852 53637 - PCMT | Ubie_methyltran | FtsJ | MTS | MetW | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2720_2 HRGMv2_2720_2_45 53665 55281 - 3.A.1.121.4
CAZyme HRGMv2_2720_2 HRGMv2_2720_2_46 55507 56949 + GT5
pfam HRGMv2_2720_2 HRGMv2_2720_2_47 57142 58215 - PFK
TC HRGMv2_2720_2 HRGMv2_2720_2_48 58247 60352 - 1.B.52.2.1
CAZyme HRGMv2_2720_2 HRGMv2_2720_2_49 60539 61405 + CE4
Gene ID: HRGMv2_2720_2_42
Type: CAZyme
Location: 50745 - 52244 (-)
Gene ID: HRGMv2_2720_2_43
Type: pfam
Location: 52340 - 52837 (-)
Gene ID: HRGMv2_2720_2_44
Type: pfam
Location: 52852 - 53637 (-)
Gene ID: HRGMv2_2720_2_45
Type: TC
Location: 53665 - 55281 (-)
Gene ID: HRGMv2_2720_2_46
Type: CAZyme
Location: 55507 - 56949 (+)
Gene ID: HRGMv2_2720_2_47
Type: pfam
Location: 57142 - 58215 (-)
Gene ID: HRGMv2_2720_2_48
Type: TC
Location: 58247 - 60352 (-)
Gene ID: HRGMv2_2720_2_49
Type: CAZyme
Location: 60539 - 61405 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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