Cluster: HRGMv2_2720_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2720
- CGC Family ID: CGCFAM_08000
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2720_3 | HRGMv2_2720_3_153 | 172772 | 175180 | + | GH94 |
| TF | HRGMv2_2720_3 | HRGMv2_2720_3_154 | 175607 | 175975 | + | GntR |
| TC | HRGMv2_2720_3 | HRGMv2_2720_3_155 | 175972 | 176829 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | HRGMv2_2720_3 | HRGMv2_2720_3_156 | 176826 | 177575 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2720_3 | HRGMv2_2720_3_157 | 177577 | 178260 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2720_3 | HRGMv2_2720_3_158 | 178336 | 179649 | - | CE17 |
Gene ID: HRGMv2_2720_3_153
Type: CAZyme
Location: 172772 - 175180 (+)
Type: CAZyme
Location: 172772 - 175180 (+)
Gene ID: HRGMv2_2720_3_154
Type: TF
Location: 175607 - 175975 (+)
Type: TF
Location: 175607 - 175975 (+)
Gene ID: HRGMv2_2720_3_155
Type: TC
Location: 175972 - 176829 (+)
Type: TC
Location: 175972 - 176829 (+)
Gene ID: HRGMv2_2720_3_156
Type:
Location: 176826 - 177575 (+)
Type:
Location: 176826 - 177575 (+)
Gene ID: HRGMv2_2720_3_157
Type:
Location: 177577 - 178260 (+)
Type:
Location: 177577 - 178260 (+)
Gene ID: HRGMv2_2720_3_158
Type: CAZyme
Location: 178336 - 179649 (-)
Type: CAZyme
Location: 178336 - 179649 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Species
Hominimerdicola sp900539095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.