Cluster: HRGMv2_2720_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2720
- CGC Family ID: CGCFAM_05249
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2720_12 | HRGMv2_2720_12_11 | 12320 | 13045 | - | 3.A.1.3.25 |
| TC | HRGMv2_2720_12 | HRGMv2_2720_12_12 | 13032 | 13724 | - | 3.A.1.3.12 |
| TC | HRGMv2_2720_12 | HRGMv2_2720_12_13 | 13793 | 14572 | - | 3.A.1.3.27 |
| TC | HRGMv2_2720_12 | HRGMv2_2720_12_14 | 14792 | 15427 | - | 3.D.1.8.1 |
| pfam | HRGMv2_2720_12 | HRGMv2_2720_12_15 | 15655 | 18339 | + | YfhO |
| CAZyme | HRGMv2_2720_12 | HRGMv2_2720_12_16 | 18564 | 20219 | - | CBM35 | GH26 |
| CAZyme | HRGMv2_2720_12 | HRGMv2_2720_12_17 | 20455 | 21300 | - | GT2 |
Gene ID: HRGMv2_2720_12_11
Type: TC
Location: 12320 - 13045 (-)
Type: TC
Location: 12320 - 13045 (-)
Gene ID: HRGMv2_2720_12_12
Type: TC
Location: 13032 - 13724 (-)
Type: TC
Location: 13032 - 13724 (-)
Gene ID: HRGMv2_2720_12_13
Type: TC
Location: 13793 - 14572 (-)
Type: TC
Location: 13793 - 14572 (-)
Gene ID: HRGMv2_2720_12_14
Type: TC
Location: 14792 - 15427 (-)
Type: TC
Location: 14792 - 15427 (-)
Gene ID: HRGMv2_2720_12_15
Type: pfam
Location: 15655 - 18339 (+)
Type: pfam
Location: 15655 - 18339 (+)
Gene ID: HRGMv2_2720_12_16
Type: CAZyme
Location: 18564 - 20219 (-)
Type: CAZyme
Location: 18564 - 20219 (-)
Gene ID: HRGMv2_2720_12_17
Type: CAZyme
Location: 20455 - 21300 (-)
Type: CAZyme
Location: 20455 - 21300 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Hominimerdicola
Species
Hominimerdicola sp900539095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.