Genome Details
Selected Rep_genome_ID: HRGMv2_2495
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus lactis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG396_bin.33 | 2,260,643 | 99.62% | 0.38% | NA | Africa | H3AfricaPhase2 |
| CGMR055525 | 2,314,094 | 100% | 0.19% | China | Asia | CGMR |
| HRGMv2_2495 | 2,239,250 | 100% | 0% | South Korea | Asia | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2495_CGC17 | CGCFAM_00012 | Yes | 5 | 1 | host glycan/beta-glucan |
| HRGMv2_2495_CGC4 | CGCFAM_00099 | Yes | 3 | 1 | |
| HRGMv2_2495_CGC15 | CGCFAM_00209 | Yes | 4 | 1 | |
| HRGMv2_2495_CGC6 | CGCFAM_00503 | Yes | 8 | 3 | |
| HRGMv2_2495_CGC18 | CGCFAM_00992 | Yes | 20 | 11 | |
| HRGMv2_2495_CGC21 | CGCFAM_01252 | Yes | 5 | 1 | alpha-glucan |
| PUL0402_HRGMv2_2495_C0 | CGCFAM_02289 | Yes | 5 | 1 | xylan |
| HRGMv2_2495_CGC11 | CGCFAM_03243 | Yes | 7 | 1 | |
| HRGMv2_2495_CGC5 | CGCFAM_04179 | Yes | 9 | 5 | |
| HRGMv2_2495_CGC13 | CGCFAM_04517 | Yes | 11 | 4 | |
| HRGMv2_2495_CGC2 | CGCFAM_04651 | Yes | 17 | 8 | |
| PUL0168_HRGMv2_2495_C0 | CGCFAM_06422 | Yes | 9 | 1 | host glycan |
| HRGMv2_2495_CGC1 | CGCFAM_07072 | Yes | 11 | 4 | |
| HRGMv2_2495_CGC22 | CGCFAM_07074 | Yes | 6 | 2 | |
| HRGMv2_2495_CGC14 | CGCFAM_10100 | Yes | 8 | 2 | |
| HRGMv2_2495_CGC7 | CGCFAM_10101 | Yes | 4 | 2 | |
| HRGMv2_2495_CGC9 | CGCFAM_10102 | Yes | 4 | 1 |
Top CAZyme Families