Cluster: PUL0168_HRGMv2_2495_C0
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: HRGMv2_2495
- CGC Family ID: CGCFAM_06422
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| pfam | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_56 | 52295 | 53287 | - | DUF915 |
| pfam | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_57 | 53362 | 54342 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_58 | 54394 | 57381 | - | GH2 |
| pfam | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_59 | 57396 | 57857 | - | Hexapep | Hexapep_2 |
| pfam | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_60 | 58059 | 59540 | - | GalP_UDP_transf | GalP_UDP_tr_C |
| pfam | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_61 | 59714 | 60913 | - | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| pfam | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_62 | 60940 | 61959 | - | Aldose_epim |
| TF | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_64 | 63756 | 64490 | - | HTH_6 |
| TC | PUL0168_HRGMv2_2495_C0 | HRGMv2_2495_3_65 | 64619 | 65623 | + | 8.A.5.1.3 |
Gene ID: HRGMv2_2495_3_56
Type: pfam
Location: 52295 - 53287 (-)
Type: pfam
Location: 52295 - 53287 (-)
Gene ID: HRGMv2_2495_3_57
Type: pfam
Location: 53362 - 54342 (-)
Type: pfam
Location: 53362 - 54342 (-)
Gene ID: HRGMv2_2495_3_58
Type: CAZyme
Location: 54394 - 57381 (-)
Type: CAZyme
Location: 54394 - 57381 (-)
Gene ID: HRGMv2_2495_3_59
Type: pfam
Location: 57396 - 57857 (-)
Type: pfam
Location: 57396 - 57857 (-)
Gene ID: HRGMv2_2495_3_60
Type: pfam
Location: 58059 - 59540 (-)
Type: pfam
Location: 58059 - 59540 (-)
Gene ID: HRGMv2_2495_3_61
Type: pfam
Location: 59714 - 60913 (-)
Type: pfam
Location: 59714 - 60913 (-)
Gene ID: HRGMv2_2495_3_62
Type: pfam
Location: 60940 - 61959 (-)
Type: pfam
Location: 60940 - 61959 (-)
Gene ID: HRGMv2_2495_3_64
Type: TF
Location: 63756 - 64490 (-)
Type: TF
Location: 63756 - 64490 (-)
Gene ID: HRGMv2_2495_3_65
Type: TC
Location: 64619 - 65623 (+)
Type: TC
Location: 64619 - 65623 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus lactis
Gene Composition
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