Cluster: HRGMv2_2495_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2495
- CGC Family ID: CGCFAM_03243
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2495_6 | HRGMv2_2495_6_82 | 76851 | 79256 | - | GT51 |
| pfam | HRGMv2_2495_6 | HRGMv2_2495_6_83 | 79401 | 80660 | + | tRNA-synt_1b | S4 | SYY_C-terminal |
| NULL(UNKNOWN) | HRGMv2_2495_6 | HRGMv2_2495_6_84 | 80784 | 81254 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2495_6 | HRGMv2_2495_6_85 | 81345 | 83387 | + | 2.A.36.3.2 |
| pfam | HRGMv2_2495_6 | HRGMv2_2495_6_86 | 83423 | 83857 | - | OsmC |
| pfam | HRGMv2_2495_6 | HRGMv2_2495_6_87 | 83954 | 84559 | - | Flavodoxin_2 | FMN_red |
| TC | HRGMv2_2495_6 | HRGMv2_2495_6_88 | 84720 | 86123 | - | 2.A.1.3.17 |
Gene ID: HRGMv2_2495_6_82
Type: CAZyme
Location: 76851 - 79256 (-)
Type: CAZyme
Location: 76851 - 79256 (-)
Gene ID: HRGMv2_2495_6_83
Type: pfam
Location: 79401 - 80660 (+)
Type: pfam
Location: 79401 - 80660 (+)
Gene ID: HRGMv2_2495_6_84
Type:
Location: 80784 - 81254 (+)
Type:
Location: 80784 - 81254 (+)
Gene ID: HRGMv2_2495_6_85
Type: TC
Location: 81345 - 83387 (+)
Type: TC
Location: 81345 - 83387 (+)
Gene ID: HRGMv2_2495_6_86
Type: pfam
Location: 83423 - 83857 (-)
Type: pfam
Location: 83423 - 83857 (-)
Gene ID: HRGMv2_2495_6_87
Type: pfam
Location: 83954 - 84559 (-)
Type: pfam
Location: 83954 - 84559 (-)
Gene ID: HRGMv2_2495_6_88
Type: TC
Location: 84720 - 86123 (-)
Type: TC
Location: 84720 - 86123 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus lactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.