Cluster: HRGMv2_2495_CGC2
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_2495
- CGC Family ID: CGCFAM_04651
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_62 | 65112 | 66539 | - | GH1 |
| TC | HRGMv2_2495_1 | HRGMv2_2495_1_63 | 66569 | 67177 | - | 9.B.28.1.11 |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_64 | 67292 | 70063 | - | CBM32 | GH85 |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_65 | 70127 | 71674 | - | GH13_31 |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_66 | 71667 | 72644 | - | GH20 |
| pfam | HRGMv2_2495_1 | HRGMv2_2495_1_67 | 72722 | 74173 | - | DUF3502 |
| TC | HRGMv2_2495_1 | HRGMv2_2495_1_68 | 74276 | 75196 | - | 3.A.1.1.29 |
| TC | HRGMv2_2495_1 | HRGMv2_2495_1_69 | 75252 | 76184 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_70 | 76181 | 78880 | - | GH38 |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_71 | 78915 | 80210 | - | GH125 |
| TF | HRGMv2_2495_1 | HRGMv2_2495_1_72 | 80449 | 81486 | + | GntR |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_73 | 81483 | 83636 | + | GH92 |
| pfam | HRGMv2_2495_1 | HRGMv2_2495_1_74 | 83729 | 86197 | - | XFP | XFP_C | XFP_N |
| TC | HRGMv2_2495_1 | HRGMv2_2495_1_75 | 86355 | 87656 | - | 2.A.1.1.41 |
| pfam | HRGMv2_2495_1 | HRGMv2_2495_1_76 | 87825 | 88427 | - | Hexapep | Hexapep_2 | Hexapep_2 |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_77 | 88485 | 90164 | - | CBM91 | GH43_11 |
| TC | HRGMv2_2495_1 | HRGMv2_2495_1_78 | 90189 | 91661 | - | 2.A.2.3.2 |
Gene ID: HRGMv2_2495_1_62
Type: CAZyme
Location: 65112 - 66539 (-)
Type: CAZyme
Location: 65112 - 66539 (-)
Gene ID: HRGMv2_2495_1_63
Type: TC
Location: 66569 - 67177 (-)
Type: TC
Location: 66569 - 67177 (-)
Gene ID: HRGMv2_2495_1_64
Type: CAZyme
Location: 67292 - 70063 (-)
Type: CAZyme
Location: 67292 - 70063 (-)
Gene ID: HRGMv2_2495_1_65
Type: CAZyme
Location: 70127 - 71674 (-)
Type: CAZyme
Location: 70127 - 71674 (-)
Gene ID: HRGMv2_2495_1_66
Type: CAZyme
Location: 71667 - 72644 (-)
Type: CAZyme
Location: 71667 - 72644 (-)
Gene ID: HRGMv2_2495_1_67
Type: pfam
Location: 72722 - 74173 (-)
Type: pfam
Location: 72722 - 74173 (-)
Gene ID: HRGMv2_2495_1_68
Type: TC
Location: 74276 - 75196 (-)
Type: TC
Location: 74276 - 75196 (-)
Gene ID: HRGMv2_2495_1_69
Type: TC
Location: 75252 - 76184 (-)
Type: TC
Location: 75252 - 76184 (-)
Gene ID: HRGMv2_2495_1_70
Type: CAZyme
Location: 76181 - 78880 (-)
Type: CAZyme
Location: 76181 - 78880 (-)
Gene ID: HRGMv2_2495_1_71
Type: CAZyme
Location: 78915 - 80210 (-)
Type: CAZyme
Location: 78915 - 80210 (-)
Gene ID: HRGMv2_2495_1_72
Type: TF
Location: 80449 - 81486 (+)
Type: TF
Location: 80449 - 81486 (+)
Gene ID: HRGMv2_2495_1_73
Type: CAZyme
Location: 81483 - 83636 (+)
Type: CAZyme
Location: 81483 - 83636 (+)
Gene ID: HRGMv2_2495_1_74
Type: pfam
Location: 83729 - 86197 (-)
Type: pfam
Location: 83729 - 86197 (-)
Gene ID: HRGMv2_2495_1_75
Type: TC
Location: 86355 - 87656 (-)
Type: TC
Location: 86355 - 87656 (-)
Gene ID: HRGMv2_2495_1_76
Type: pfam
Location: 87825 - 88427 (-)
Type: pfam
Location: 87825 - 88427 (-)
Gene ID: HRGMv2_2495_1_77
Type: CAZyme
Location: 88485 - 90164 (-)
Type: CAZyme
Location: 88485 - 90164 (-)
Gene ID: HRGMv2_2495_1_78
Type: TC
Location: 90189 - 91661 (-)
Type: TC
Location: 90189 - 91661 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus lactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.