Cluster: HRGMv2_2495_CGC1
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2495
- CGC Family ID: CGCFAM_07072
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2495_1 | HRGMv2_2495_1_22 | 17934 | 19655 | - | 3.A.1.12.5 |
| TC | HRGMv2_2495_1 | HRGMv2_2495_1_23 | 19652 | 20878 | - | 3.A.1.12.5 |
| TF | HRGMv2_2495_1 | HRGMv2_2495_1_24 | 21090 | 21710 | - | GntR |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_25 | 21926 | 23551 | - | GT4 |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_26 | 23575 | 25095 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_2495_1 | HRGMv2_2495_1_27 | 25135 | 28404 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2495_1 | HRGMv2_2495_1_28 | 28554 | 28829 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_29 | 28826 | 29506 | - | GT2 |
| pfam | HRGMv2_2495_1 | HRGMv2_2495_1_30 | 29722 | 34083 | - | Big_3 |
| CAZyme | HRGMv2_2495_1 | HRGMv2_2495_1_31 | 34693 | 36129 | - | GH1 |
| TC | HRGMv2_2495_1 | HRGMv2_2495_1_32 | 36177 | 38087 | - | 4.A.1.2.6 |
Gene ID: HRGMv2_2495_1_22
Type: TC
Location: 17934 - 19655 (-)
Type: TC
Location: 17934 - 19655 (-)
Gene ID: HRGMv2_2495_1_23
Type: TC
Location: 19652 - 20878 (-)
Type: TC
Location: 19652 - 20878 (-)
Gene ID: HRGMv2_2495_1_24
Type: TF
Location: 21090 - 21710 (-)
Type: TF
Location: 21090 - 21710 (-)
Gene ID: HRGMv2_2495_1_25
Type: CAZyme
Location: 21926 - 23551 (-)
Type: CAZyme
Location: 21926 - 23551 (-)
Gene ID: HRGMv2_2495_1_26
Type: CAZyme
Location: 23575 - 25095 (-)
Type: CAZyme
Location: 23575 - 25095 (-)
Gene ID: HRGMv2_2495_1_27
Type:
Location: 25135 - 28404 (-)
Type:
Location: 25135 - 28404 (-)
Gene ID: HRGMv2_2495_1_28
Type:
Location: 28554 - 28829 (-)
Type:
Location: 28554 - 28829 (-)
Gene ID: HRGMv2_2495_1_29
Type: CAZyme
Location: 28826 - 29506 (-)
Type: CAZyme
Location: 28826 - 29506 (-)
Gene ID: HRGMv2_2495_1_30
Type: pfam
Location: 29722 - 34083 (-)
Type: pfam
Location: 29722 - 34083 (-)
Gene ID: HRGMv2_2495_1_31
Type: CAZyme
Location: 34693 - 36129 (-)
Type: CAZyme
Location: 34693 - 36129 (-)
Gene ID: HRGMv2_2495_1_32
Type: TC
Location: 36177 - 38087 (-)
Type: TC
Location: 36177 - 38087 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus lactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.