Genome Details
Selected Rep_genome_ID: HRGMv2_0373
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900545315
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR061640 | 2,453,770 | 97.34% | 0.48% | China | Asia | CGMR |
| HRGMv2_0373 | 2,524,270 | 99.97% | 0.48% | UK | Europe | HRGM |
| MGYG000004469 | 2,457,179 | 99.04% | 0.96% | Israel | Asia | UHGG |
| Rep_589 | 2,409,010 | 98.0769% | 0.961538% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0373_CGC11 | CGCFAM_00013 | Yes | 7 | 1 | |
| HRGMv2_0373_CGC14 | CGCFAM_02706 | Yes | 5 | 1 | |
| HRGMv2_0373_CGC8 | CGCFAM_04855 | Yes | 9 | 5 | |
| HRGMv2_0373_CGC5 | CGCFAM_07881 | Yes | 8 | 4 | |
| HRGMv2_0373_CGC12 | CGCFAM_08742 | Yes | 4 | 1 | |
| HRGMv2_0373_CGC17 | CGCFAM_09183 | Yes | 14 | 1 | |
| HRGMv2_0373_CGC10 | CGCFAM_09510 | Yes | 9 | 1 | |
| HRGMv2_0373_CGC9 | CGCFAM_09511 | Yes | 24 | 9 | |
| HRGMv2_0373_CGC3 | CGCFAM_09512 | Yes | 10 | 3 | |
| HRGMv2_0373_CGC2 | CGCFAM_09513 | Yes | 7 | 2 | |
| HRGMv2_0373_CGC19 | CGCFAM_09514 | Yes | 11 | 7 |
Top CAZyme Families