Cluster: HRGMv2_0373_CGC17
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0373
- CGC Family ID: CGCFAM_09183
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0373_4 | HRGMv2_0373_4_82 | 108884 | 111013 | - | GH78 |
| pfam | HRGMv2_0373_4 | HRGMv2_0373_4_83 | 111679 | 113742 | - | Plug |
| pfam | HRGMv2_0373_4 | HRGMv2_0373_4_84 | 114083 | 115228 | - | DUF5074 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_85 | 116074 | 117930 | + | 3.B.1.1.6 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_86 | 118375 | 118725 | + | 3.D.1.8.1 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_87 | 118716 | 119318 | + | 3.D.1.6.1 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_88 | 119311 | 120939 | + | 3.D.1.5.1 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_89 | 120970 | 122046 | + | 3.D.1.5.1 |
| STP | HRGMv2_0373_4 | HRGMv2_0373_4_90 | 122059 | 122526 | + | Fer4 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_91 | 122533 | 123051 | + | 3.D.1.5.1 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_92 | 123055 | 123363 | + | 3.D.1.8.1 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_93 | 123376 | 125286 | + | 3.D.9.1.1 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_94 | 125309 | 126802 | + | 3.D.1.5.1 |
| TC | HRGMv2_0373_4 | HRGMv2_0373_4_95 | 126809 | 128227 | + | 3.D.1.8.1 |
Gene ID: HRGMv2_0373_4_82
Type: CAZyme
Location: 108884 - 111013 (-)
Type: CAZyme
Location: 108884 - 111013 (-)
Gene ID: HRGMv2_0373_4_83
Type: pfam
Location: 111679 - 113742 (-)
Type: pfam
Location: 111679 - 113742 (-)
Gene ID: HRGMv2_0373_4_84
Type: pfam
Location: 114083 - 115228 (-)
Type: pfam
Location: 114083 - 115228 (-)
Gene ID: HRGMv2_0373_4_85
Type: TC
Location: 116074 - 117930 (+)
Type: TC
Location: 116074 - 117930 (+)
Gene ID: HRGMv2_0373_4_86
Type: TC
Location: 118375 - 118725 (+)
Type: TC
Location: 118375 - 118725 (+)
Gene ID: HRGMv2_0373_4_87
Type: TC
Location: 118716 - 119318 (+)
Type: TC
Location: 118716 - 119318 (+)
Gene ID: HRGMv2_0373_4_88
Type: TC
Location: 119311 - 120939 (+)
Type: TC
Location: 119311 - 120939 (+)
Gene ID: HRGMv2_0373_4_89
Type: TC
Location: 120970 - 122046 (+)
Type: TC
Location: 120970 - 122046 (+)
Gene ID: HRGMv2_0373_4_90
Type: STP
Location: 122059 - 122526 (+)
Type: STP
Location: 122059 - 122526 (+)
Gene ID: HRGMv2_0373_4_91
Type: TC
Location: 122533 - 123051 (+)
Type: TC
Location: 122533 - 123051 (+)
Gene ID: HRGMv2_0373_4_92
Type: TC
Location: 123055 - 123363 (+)
Type: TC
Location: 123055 - 123363 (+)
Gene ID: HRGMv2_0373_4_93
Type: TC
Location: 123376 - 125286 (+)
Type: TC
Location: 123376 - 125286 (+)
Gene ID: HRGMv2_0373_4_94
Type: TC
Location: 125309 - 126802 (+)
Type: TC
Location: 125309 - 126802 (+)
Gene ID: HRGMv2_0373_4_95
Type: TC
Location: 126809 - 128227 (+)
Type: TC
Location: 126809 - 128227 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900545315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0373_4_90 | vegan > omnivore | 2.13757 | 0.00207 |
| HRGMv2_0373_4_90 | vegetarian > omnivore | 3.26260 | 0.03580 |
| HRGMv2_0373_4_91 | vegan > omnivore | 3.45640 | 0.00207 |
| HRGMv2_0373_4_91 | vegetarian > omnivore | 4.44523 | 0.01188 |
| HRGMv2_0373_4_92 | vegetarian > omnivore | 2.28958 | 0.03580 |