Cluster: HRGMv2_0373_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0373
- CGC Family ID: CGCFAM_09513
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_52 | 68247 | 69755 | + | GH29 |
| pfam | HRGMv2_0373_1 | HRGMv2_0373_1_53 | 70115 | 71143 | + | EamA | EamA |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_54 | 71469 | 72440 | - | GT90 |
| NULL(UNKNOWN) | HRGMv2_0373_1 | HRGMv2_0373_1_55 | 72452 | 72577 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_56 | 72728 | 73501 | - | 3.A.1.13.2 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_57 | 73513 | 74532 | - | 3.A.1.13.2 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_58 | 74729 | 75892 | - | 3.A.1.13.2 |
Gene ID: HRGMv2_0373_1_52
Type: CAZyme
Location: 68247 - 69755 (+)
Type: CAZyme
Location: 68247 - 69755 (+)
Gene ID: HRGMv2_0373_1_53
Type: pfam
Location: 70115 - 71143 (+)
Type: pfam
Location: 70115 - 71143 (+)
Gene ID: HRGMv2_0373_1_54
Type: CAZyme
Location: 71469 - 72440 (-)
Type: CAZyme
Location: 71469 - 72440 (-)
Gene ID: HRGMv2_0373_1_55
Type:
Location: 72452 - 72577 (-)
Type:
Location: 72452 - 72577 (-)
Gene ID: HRGMv2_0373_1_56
Type: TC
Location: 72728 - 73501 (-)
Type: TC
Location: 72728 - 73501 (-)
Gene ID: HRGMv2_0373_1_57
Type: TC
Location: 73513 - 74532 (-)
Type: TC
Location: 73513 - 74532 (-)
Gene ID: HRGMv2_0373_1_58
Type: TC
Location: 74729 - 75892 (-)
Type: TC
Location: 74729 - 75892 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900545315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.