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Cluster: HRGMv2_0373_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0373_1 HRGMv2_0373_1_62 79491 82316 - 1.B.14.12.3
STP HRGMv2_0373_1 HRGMv2_0373_1_63 82542 84098 + PglZ | Response_reg
pfam HRGMv2_0373_1 HRGMv2_0373_1_64 84496 84915 + TsaE
CAZyme HRGMv2_0373_1 HRGMv2_0373_1_65 85298 86548 - GH88
CAZyme HRGMv2_0373_1 HRGMv2_0373_1_66 86614 88449 - PL35
NULL(UNKNOWN) HRGMv2_0373_1 HRGMv2_0373_1_67 88570 88725 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0373_1 HRGMv2_0373_1_68 89156 89605 - NT5C
CAZyme HRGMv2_0373_1 HRGMv2_0373_1_69 89897 90892 - GT4
pfam HRGMv2_0373_1 HRGMv2_0373_1_70 91174 91425 + Ribosomal_S20p
TC HRGMv2_0373_1 HRGMv2_0373_1_71 92195 94786 + 3.A.9.1.2
Gene ID: HRGMv2_0373_1_62
Type: TC
Location: 79491 - 82316 (-)
Gene ID: HRGMv2_0373_1_63
Type: STP
Location: 82542 - 84098 (+)
Gene ID: HRGMv2_0373_1_64
Type: pfam
Location: 84496 - 84915 (+)
Gene ID: HRGMv2_0373_1_65
Type: CAZyme
Location: 85298 - 86548 (-)
Gene ID: HRGMv2_0373_1_66
Type: CAZyme
Location: 86614 - 88449 (-)
Gene ID: HRGMv2_0373_1_67
Type:
Location: 88570 - 88725 (-)
Gene ID: HRGMv2_0373_1_68
Type: pfam
Location: 89156 - 89605 (-)
Gene ID: HRGMv2_0373_1_69
Type: CAZyme
Location: 89897 - 90892 (-)
Gene ID: HRGMv2_0373_1_70
Type: pfam
Location: 91174 - 91425 (+)
Gene ID: HRGMv2_0373_1_71
Type: TC
Location: 92195 - 94786 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0373_1_70 vegetarian > omnivore 1.07101 0.03580

🧭 Explore Read Mapping of CGC

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