Cluster: HRGMv2_0373_CGC9
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0373
- CGC Family ID: CGCFAM_09511
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_453 | 543788 | 545854 | - | 9.B.14.3.1 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_454 | 546063 | 547532 | - | GH28 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_455 | 547624 | 550515 | - | GH106 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_456 | 550574 | 552061 | - | GH28 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_457 | 552198 | 555110 | - | GH106 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_458 | 555504 | 556262 | - | GH28 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_459 | 556313 | 557800 | - | GH28 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_460 | 557920 | 560796 | - | GH106 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_461 | 562204 | 563421 | + | 2.A.6.2.29 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_462 | 563448 | 566612 | + | 2.A.6.2.22 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_463 | 566657 | 568138 | + | 1.B.17.3.5 |
| NULL(UNKNOWN) | HRGMv2_0373_1 | HRGMv2_0373_1_464 | 568286 | 568429 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_465 | 569003 | 570358 | + | 2.A.66.1.32 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_466 | 570622 | 571491 | - | 3.A.2.1.7 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_467 | 571495 | 573075 | - | 3.A.2.1.7 |
| pfam | HRGMv2_0373_1 | HRGMv2_0373_1_468 | 573122 | 573676 | - | OSCP |
| pfam | HRGMv2_0373_1 | HRGMv2_0373_1_469 | 573689 | 574204 | - | ATP-synt_B | YMF19 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_470 | 574225 | 574473 | - | 3.A.2.1.6 |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_471 | 574557 | 575750 | - | 3.A.2.1.7 |
| NULL(UNKNOWN) | HRGMv2_0373_1 | HRGMv2_0373_1_472 | 575753 | 576178 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0373_1 | HRGMv2_0373_1_473 | 576227 | 576463 | - | ATP-synt_DE_N |
| TC | HRGMv2_0373_1 | HRGMv2_0373_1_474 | 576460 | 578007 | - | 3.A.2.1.2 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_475 | 579388 | 581736 | + | GH31 |
| CAZyme | HRGMv2_0373_1 | HRGMv2_0373_1_476 | 582009 | 584882 | + | GH106 |
Gene ID: HRGMv2_0373_1_453
Type: TC
Location: 543788 - 545854 (-)
Type: TC
Location: 543788 - 545854 (-)
Gene ID: HRGMv2_0373_1_454
Type: CAZyme
Location: 546063 - 547532 (-)
Type: CAZyme
Location: 546063 - 547532 (-)
Gene ID: HRGMv2_0373_1_455
Type: CAZyme
Location: 547624 - 550515 (-)
Type: CAZyme
Location: 547624 - 550515 (-)
Gene ID: HRGMv2_0373_1_456
Type: CAZyme
Location: 550574 - 552061 (-)
Type: CAZyme
Location: 550574 - 552061 (-)
Gene ID: HRGMv2_0373_1_457
Type: CAZyme
Location: 552198 - 555110 (-)
Type: CAZyme
Location: 552198 - 555110 (-)
Gene ID: HRGMv2_0373_1_458
Type: CAZyme
Location: 555504 - 556262 (-)
Type: CAZyme
Location: 555504 - 556262 (-)
Gene ID: HRGMv2_0373_1_459
Type: CAZyme
Location: 556313 - 557800 (-)
Type: CAZyme
Location: 556313 - 557800 (-)
Gene ID: HRGMv2_0373_1_460
Type: CAZyme
Location: 557920 - 560796 (-)
Type: CAZyme
Location: 557920 - 560796 (-)
Gene ID: HRGMv2_0373_1_461
Type: TC
Location: 562204 - 563421 (+)
Type: TC
Location: 562204 - 563421 (+)
Gene ID: HRGMv2_0373_1_462
Type: TC
Location: 563448 - 566612 (+)
Type: TC
Location: 563448 - 566612 (+)
Gene ID: HRGMv2_0373_1_463
Type: TC
Location: 566657 - 568138 (+)
Type: TC
Location: 566657 - 568138 (+)
Gene ID: HRGMv2_0373_1_464
Type:
Location: 568286 - 568429 (-)
Type:
Location: 568286 - 568429 (-)
Gene ID: HRGMv2_0373_1_465
Type: TC
Location: 569003 - 570358 (+)
Type: TC
Location: 569003 - 570358 (+)
Gene ID: HRGMv2_0373_1_466
Type: TC
Location: 570622 - 571491 (-)
Type: TC
Location: 570622 - 571491 (-)
Gene ID: HRGMv2_0373_1_467
Type: TC
Location: 571495 - 573075 (-)
Type: TC
Location: 571495 - 573075 (-)
Gene ID: HRGMv2_0373_1_468
Type: pfam
Location: 573122 - 573676 (-)
Type: pfam
Location: 573122 - 573676 (-)
Gene ID: HRGMv2_0373_1_469
Type: pfam
Location: 573689 - 574204 (-)
Type: pfam
Location: 573689 - 574204 (-)
Gene ID: HRGMv2_0373_1_470
Type: TC
Location: 574225 - 574473 (-)
Type: TC
Location: 574225 - 574473 (-)
Gene ID: HRGMv2_0373_1_471
Type: TC
Location: 574557 - 575750 (-)
Type: TC
Location: 574557 - 575750 (-)
Gene ID: HRGMv2_0373_1_472
Type:
Location: 575753 - 576178 (-)
Type:
Location: 575753 - 576178 (-)
Gene ID: HRGMv2_0373_1_473
Type: pfam
Location: 576227 - 576463 (-)
Type: pfam
Location: 576227 - 576463 (-)
Gene ID: HRGMv2_0373_1_474
Type: TC
Location: 576460 - 578007 (-)
Type: TC
Location: 576460 - 578007 (-)
Gene ID: HRGMv2_0373_1_475
Type: CAZyme
Location: 579388 - 581736 (+)
Type: CAZyme
Location: 579388 - 581736 (+)
Gene ID: HRGMv2_0373_1_476
Type: CAZyme
Location: 582009 - 584882 (+)
Type: CAZyme
Location: 582009 - 584882 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900545315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0373_1_459 | vegan > omnivore | 1.20972 | 0.00207 |
| HRGMv2_0373_1_459 | vegetarian > omnivore | 2.66051 | 0.03580 |
| HRGMv2_0373_1_469 | vegan > omnivore | 1.99761 | 0.00207 |
| HRGMv2_0373_1_469 | vegetarian > omnivore | 2.64413 | 0.03580 |
| HRGMv2_0373_1_470 | vegetarian > omnivore | 1.41089 | 0.03580 |
| HRGMv2_0373_1_473 | vegan > omnivore | 1.83687 | 0.00207 |
| HRGMv2_0373_1_473 | vegetarian > omnivore | 2.00630 | 0.03580 |