Genome Details
Selected Rep_genome_ID: HRGMv2_0339
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp944323075
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR065105 | 2,114,037 | 93.03% | 2.4% | China | Asia | CGMR |
| HRGMv2_0339 | 2,445,836 | 100% | 0.48% | South Korea | Asia | HRGM |
| MGYG000004197 | 2,419,423 | 97.12% | 1.68% | United Kingdom | Europe | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0339_CGC18 | CGCFAM_00272 | Yes | 4 | 1 | |
| HRGMv2_0339_CGC15 | CGCFAM_00915 | Yes | 11 | 1 | |
| HRGMv2_0339_CGC29 | CGCFAM_00923 | Yes | 3 | 1 | |
| HRGMv2_0339_CGC35 | CGCFAM_01376 | Yes | 3 | 1 | |
| HRGMv2_0339_CGC33 | CGCFAM_01423 | Yes | 10 | 2 | |
| HRGMv2_0339_CGC24 | CGCFAM_01784 | Yes | 4 | 2 | |
| HRGMv2_0339_CGC7 | CGCFAM_01971 | Yes | 6 | 2 | |
| HRGMv2_0339_CGC39 | CGCFAM_02163 | Yes | 5 | 1 | |
| HRGMv2_0339_CGC9 | CGCFAM_03644 | Yes | 9 | 3 | |
| HRGMv2_0339_CGC17 | CGCFAM_05215 | Yes | 7 | 2 | |
| HRGMv2_0339_CGC26 | CGCFAM_05761 | Yes | 4 | 2 | |
| HRGMv2_0339_CGC8 | CGCFAM_05763 | Yes | 8 | 3 | |
| HRGMv2_0339_CGC21 | CGCFAM_06899 | Yes | 3 | 1 | |
| HRGMv2_0339_CGC27 | CGCFAM_08970 | Yes | 8 | 1 | |
| HRGMv2_0339_CGC5 | CGCFAM_08971 | Yes | 4 | 1 | |
| HRGMv2_0339_CGC23 | CGCFAM_09618 | Yes | 4 | 1 |
Top CAZyme Families