Cluster: HRGMv2_0339_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0339
- CGC Family ID: CGCFAM_00272
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0339_2 | HRGMv2_0339_2_378 | 458930 | 459559 | - | 2.A.107.1.1 |
| pfam | HRGMv2_0339_2 | HRGMv2_0339_2_379 | 459576 | 461612 | + | Helicase_C | UVR | ResIII | UvrB | UvrB_inter |
| pfam | HRGMv2_0339_2 | HRGMv2_0339_2_380 | 461624 | 462118 | + | GtrA_DPMS_TM |
| CAZyme | HRGMv2_0339_2 | HRGMv2_0339_2_381 | 462173 | 463219 | - | CBM50 |
Gene ID: HRGMv2_0339_2_378
Type: TC
Location: 458930 - 459559 (-)
Type: TC
Location: 458930 - 459559 (-)
Gene ID: HRGMv2_0339_2_379
Type: pfam
Location: 459576 - 461612 (+)
Type: pfam
Location: 459576 - 461612 (+)
Gene ID: HRGMv2_0339_2_380
Type: pfam
Location: 461624 - 462118 (+)
Type: pfam
Location: 461624 - 462118 (+)
Gene ID: HRGMv2_0339_2_381
Type: CAZyme
Location: 462173 - 463219 (-)
Type: CAZyme
Location: 462173 - 463219 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp944323075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.