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Cluster: HRGMv2_0339_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0339_1 HRGMv2_0339_1_205 247013 249106 - GH36
pfam HRGMv2_0339_1 HRGMv2_0339_1_206 249401 249928 - DUF1643
CAZyme HRGMv2_0339_1 HRGMv2_0339_1_207 250135 252228 - GH172
TF HRGMv2_0339_1 HRGMv2_0339_1_208 252310 253290 - GntR
pfam HRGMv2_0339_1 HRGMv2_0339_1_209 253760 254860 + MeaB
TC HRGMv2_0339_1 HRGMv2_0339_1_210 254850 256142 - 2.A.66.1.4
pfam HRGMv2_0339_1 HRGMv2_0339_1_211 256139 257698 - FAD_binding_2 | FAD_binding_3 | NAD_binding_8 | FAD-depend_C
CAZyme HRGMv2_0339_1 HRGMv2_0339_1_212 257954 258679 + GT2
Gene ID: HRGMv2_0339_1_205
Type: CAZyme
Location: 247013 - 249106 (-)
Gene ID: HRGMv2_0339_1_206
Type: pfam
Location: 249401 - 249928 (-)
Gene ID: HRGMv2_0339_1_207
Type: CAZyme
Location: 250135 - 252228 (-)
Gene ID: HRGMv2_0339_1_208
Type: TF
Location: 252310 - 253290 (-)
Gene ID: HRGMv2_0339_1_209
Type: pfam
Location: 253760 - 254860 (+)
Gene ID: HRGMv2_0339_1_210
Type: TC
Location: 254850 - 256142 (-)
Gene ID: HRGMv2_0339_1_211
Type: pfam
Location: 256139 - 257698 (-)
Gene ID: HRGMv2_0339_1_212
Type: CAZyme
Location: 257954 - 258679 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0339_1_212 vegetarian > omnivore 1.60462 0.03944

🧭 Explore Read Mapping of CGC

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